fix: Formatting + avg => geomMean

lib/findPaths.js

@@ -1,285 +1,328 @@
 /* Imports*/
-import React from 'react';
-import { numToAlphabeticalString, formatLargeOrSmall, avg } from "../lib/utils.js"
+import React from "react";
+import {
+  numToAlphabeticalString,
+  formatLargeOrSmall,
+  avg,
+  geomMean,
+} from "../lib/utils.js";
 
 /* Functions */
 
 const pathPlusLink = (pathSoFar, link) => {
-    return [...pathSoFar, link]
-    // previously: pathSoFar.concat(link).flat()
-    // Note that concat is not destructive
-    // https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Global_Objects/Array/concat
-}
+  return [...pathSoFar, link];
+  // previously: pathSoFar.concat(link).flat()
+  // Note that concat is not destructive
+  // https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Global_Objects/Array/concat
+};
 
 async function findPathsWithoutPrunning({
-    sourceElementId, targetElementId,
-    maxLengthOfPath, pathSoFar,
-    links, nodes
+  sourceElementId,
+  targetElementId,
+  maxLengthOfPath,
+  pathSoFar,
+  links,
+  nodes,
 }) {
-    // This is an un-used function which might make findPaths more understandable
-    // It uses the same recursive functionality 
-    // but has no path prunning
-    let paths = []
+  // This is an un-used function which might make findPaths more understandable
+  // It uses the same recursive functionality
+  // but has no path prunning
+  let paths = [];
 
-    /* Path traversing */
-    if (maxLengthOfPath > 0) {
-        for (let link of links) { // vs let link of linksNow in findPaths
-            if (
-                ((link.source == sourceElementId) && (link.target == targetElementId)) ||
-                ((link.source == targetElementId) && (link.target == sourceElementId))
-            ) { // direct Path
-                let newPath = pathPlusLink(pathSoFar, link)
-                paths.push(newPath)
-            } else if ((link.source == sourceElementId)) {
-                let newPaths = await findPaths({
-                    pathSoFar: pathPlusLink(pathSoFar, link),
-                    maxLengthOfPath: (maxLengthOfPath - 1),
-                    sourceElementId: link.target,
-                    targetElementId,
-                    links: links, // vs let link of linksInner in findPaths
-                    nodes
-                })
-                if (newPaths.length != 0) { 
-                    paths.push(...newPaths)
-                }
-            } else if ((link.target == sourceElementId)) {
-                let newPaths = await findPaths({
-                    pathSoFar: pathPlusLink(pathSoFar, link),
-                    maxLengthOfPath: (maxLengthOfPath - 1),
-                    sourceElementId: link.source,
-                    targetElementId,
-                    links: links, // vs let link of linksInner in findPaths
-                    nodes
-                })
-                if (newPaths.length != 0) {
-                    paths.push(...newPaths)
-                }
-            }
+  /* Path traversing */
+  if (maxLengthOfPath > 0) {
+    for (let link of links) {
+      // vs let link of linksNow in findPaths
+      if (
+        (link.source == sourceElementId && link.target == targetElementId) ||
+        (link.source == targetElementId && link.target == sourceElementId)
+      ) {
+        // direct Path
+        let newPath = pathPlusLink(pathSoFar, link);
+        paths.push(newPath);
+      } else if (link.source == sourceElementId) {
+        let newPaths = await findPaths({
+          pathSoFar: pathPlusLink(pathSoFar, link),
+          maxLengthOfPath: maxLengthOfPath - 1,
+          sourceElementId: link.target,
+          targetElementId,
+          links: links, // vs let link of linksInner in findPaths
+          nodes,
+        });
+        if (newPaths.length != 0) {
+          paths.push(...newPaths);
         }
+      } else if (link.target == sourceElementId) {
+        let newPaths = await findPaths({
+          pathSoFar: pathPlusLink(pathSoFar, link),
+          maxLengthOfPath: maxLengthOfPath - 1,
+          sourceElementId: link.source,
+          targetElementId,
+          links: links, // vs let link of linksInner in findPaths
+          nodes,
+        });
+        if (newPaths.length != 0) {
+          paths.push(...newPaths);
+        }
+      }
     }
+  }
 
-    return paths
+  return paths;
 }
 
 async function findPaths({
-    sourceElementId, sourceElementPosition,
-    targetElementId, targetElementPosition,
-    maxLengthOfPath, pathSoFar,
-    links, nodes
+  sourceElementId,
+  sourceElementPosition,
+  targetElementId,
+  targetElementPosition,
+  maxLengthOfPath,
+  pathSoFar,
+  links,
+  nodes,
 }) {
-    // This is the key path finding function
-    // It finds the path from one element to another, recursively
-    // It used to be very computationally expensive until I added
-    // the path prunning step: Instead of traversing all links,
-    // traverse only those which are between the origin and target links
-    // this requires us to have a notion of "between"
+  // This is the key path finding function
+  // It finds the path from one element to another, recursively
+  // It used to be very computationally expensive until I added
+  // the path prunning step: Instead of traversing all links,
+  // traverse only those which are between the origin and target links
+  // this requires us to have a notion of "between"
 
-    let paths = []
+  let paths = [];
 
-    /* Path prunning*/
-    let minPos = Math.min(sourceElementPosition, targetElementPosition)
-    let maxPos = Math.max(sourceElementPosition, targetElementPosition)
-    let linksInner = links.filter(link =>
-        (minPos <= link.sourceElementPosition && link.sourceElementPosition <= maxPos) &&
-        (minPos <= link.targetElementPosition && link.targetElementPosition <= maxPos)
-    )
-    let linksNow = linksInner.filter(link => (link.source == sourceElementId || link.target == sourceElementId))
+  /* Path prunning*/
+  let minPos = Math.min(sourceElementPosition, targetElementPosition);
+  let maxPos = Math.max(sourceElementPosition, targetElementPosition);
+  let linksInner = links.filter(
+    (link) =>
+      minPos <= link.sourceElementPosition &&
+      link.sourceElementPosition <= maxPos &&
+      minPos <= link.targetElementPosition &&
+      link.targetElementPosition <= maxPos
+  );
+  let linksNow = linksInner.filter(
+    (link) => link.source == sourceElementId || link.target == sourceElementId
+  );
 
-    /* Path traversing */
-    if (maxLengthOfPath > 0) {
-        for (let link of linksNow) {
-            if (
-                ((link.source == sourceElementId) && (link.target == targetElementId)) ||
-                ((link.source == targetElementId) && (link.target == sourceElementId))
-            ) { // direct Path
-                let newPath = pathPlusLink(pathSoFar, link)
-                paths.push(newPath)
-            } else if ((link.source == sourceElementId)) {
-                let newPaths = await findPaths({
-                    pathSoFar: pathPlusLink(pathSoFar, link),
-                    maxLengthOfPath: (maxLengthOfPath - 1),
-                    sourceElementPosition: link.sourceElementPosition,
-                    sourceElementId: link.target,
-                    targetElementId, targetElementPosition,
-                    links: linksInner,
-                    nodes
-                })
-                if (newPaths.length != 0) {
-                    paths.push(...newPaths)
-                }
-            } else if ((link.target == sourceElementId)) {
-                let newPaths = await findPaths({
-                    pathSoFar: pathPlusLink(pathSoFar, link),
-                    maxLengthOfPath: (maxLengthOfPath - 1),
-                    sourceElementPosition: link.sourceElementPosition,
-                    sourceElementId: link.source,
-                    targetElementPosition,
-                    targetElementId,
-                    links: linksInner,
-                    nodes
-                })
-                if (newPaths.length != 0) {
-                    paths.push(...newPaths)
-                }
-            }
+  /* Path traversing */
+  if (maxLengthOfPath > 0) {
+    for (let link of linksNow) {
+      if (
+        (link.source == sourceElementId && link.target == targetElementId) ||
+        (link.source == targetElementId && link.target == sourceElementId)
+      ) {
+        // direct Path
+        let newPath = pathPlusLink(pathSoFar, link);
+        paths.push(newPath);
+      } else if (link.source == sourceElementId) {
+        let newPaths = await findPaths({
+          pathSoFar: pathPlusLink(pathSoFar, link),
+          maxLengthOfPath: maxLengthOfPath - 1,
+          sourceElementPosition: link.sourceElementPosition,
+          sourceElementId: link.target,
+          targetElementId,
+          targetElementPosition,
+          links: linksInner,
+          nodes,
+        });
+        if (newPaths.length != 0) {
+          paths.push(...newPaths);
         }
+      } else if (link.target == sourceElementId) {
+        let newPaths = await findPaths({
+          pathSoFar: pathPlusLink(pathSoFar, link),
+          maxLengthOfPath: maxLengthOfPath - 1,
+          sourceElementPosition: link.sourceElementPosition,
+          sourceElementId: link.source,
+          targetElementPosition,
+          targetElementId,
+          links: linksInner,
+          nodes,
+        });
+        if (newPaths.length != 0) {
+          paths.push(...newPaths);
+        }
+      }
     }
+  }
 
-    return paths
+  return paths;
 }
 
 async function findDistance({
-    sourceElementId, sourceElementPosition,
-    targetElementId, targetElementPosition,
-    nodes, links
+  sourceElementId,
+  sourceElementPosition,
+  targetElementId,
+  targetElementPosition,
+  nodes,
+  links,
 }) {
-    // This function gets all possible paths using findPaths
-    // then orders them correctly in the for loop 
-    // (by flipping the distance to 1/distance when necessary)
-    // and then gets the array of weights for the different paths.
-    console.log(`findDistance@findPaths.js from ${sourceElementPosition} to ${targetElementPosition}`)
+  // This function gets all possible paths using findPaths
+  // then orders them correctly in the for loop
+  // (by flipping the distance to 1/distance when necessary)
+  // and then gets the array of weights for the different paths.
+  console.log(
+    `findDistance@findPaths.js from ${sourceElementPosition} to ${targetElementPosition}`
+  );
 
-    let maxLengthOfPath = Math.abs(sourceElementPosition - targetElementPosition)
-    let paths = await findPaths({
-        sourceElementId, sourceElementPosition,
-        targetElementId, targetElementPosition,
-        links, nodes,
-        maxLengthOfPath, pathSoFar: []
-    });
+  let maxLengthOfPath = Math.abs(sourceElementPosition - targetElementPosition);
+  let paths = await findPaths({
+    sourceElementId,
+    sourceElementPosition,
+    targetElementId,
+    targetElementPosition,
+    links,
+    nodes,
+    maxLengthOfPath,
+    pathSoFar: [],
+  });
 
-    let weights = []
-    for (let path of paths) {
-        let currentSource = sourceElementId
-        let weight = 1
-        for (let element of path) {
-            let distance = 0
-            if (element.source == currentSource) {
-                distance = element.distance
-                currentSource = element.target
-            } else if (element.target == currentSource) {
-                distance = 1 / Number(element.distance)
-                currentSource = element.source
-            }
-            weight = weight * distance
-
-        }
-        weights.push(weight)
+  let weights = [];
+  for (let path of paths) {
+    let currentSource = sourceElementId;
+    let weight = 1;
+    for (let element of path) {
+      let distance = 0;
+      if (element.source == currentSource) {
+        distance = element.distance;
+        currentSource = element.target;
+      } else if (element.target == currentSource) {
+        distance = 1 / Number(element.distance);
+        currentSource = element.source;
+      }
+      weight = weight * distance;
     }
-    return weights
+    weights.push(weight);
+  }
+  return weights;
 }
 
 async function findDistancesForAllElements({ nodes, links }) {
-    // Simple wrapper function around findDistance
-    // Needs to find the reference point first
-    console.log("findDistancesForAllElements@findPaths.js")
-    /* Get or build reference element */
-    let referenceElements = nodes.filter(x => x.isReferenceValue)
-    let midpoint = Math.round(nodes.length / 2)
-    let referenceElement = referenceElements.length > 0 ? referenceElements[0] : nodes[midpoint]
-    console.log(`referenceElement.position: ${referenceElement.position}`)
+  // Simple wrapper function around findDistance
+  // Needs to find the reference point first
+  console.log("findDistancesForAllElements@findPaths.js");
+  /* Get or build reference element */
+  let referenceElements = nodes.filter((x) => x.isReferenceValue);
+  let midpoint = Math.round(nodes.length / 2);
+  let referenceElement =
+    referenceElements.length > 0 ? referenceElements[0] : nodes[midpoint];
+  console.log(`referenceElement.position: ${referenceElement.position}`);
 
-    /* Get distances. */
-    let distances = nodes.map(node => {
-        if (node.isReferenceValue || (node.id == referenceElement.id)) {
-            return [1]
-        } else {
-            console.log("node")
-            console.log(node)
-            let distance = findDistance({
-                sourceElementId: referenceElement.id,
-                sourceElementPosition: referenceElement.position,
-                targetElementId: node.id,
-                targetElementPosition: node.position,
-                nodes: nodes,
-                links: links,
-            })
-            return distance
-        }
-    })
-    distances = await Promise.all(distances)
-    return distances
+  /* Get distances. */
+  let distances = nodes.map((node) => {
+    if (node.isReferenceValue || node.id == referenceElement.id) {
+      return [1];
+    } else {
+      console.log("node");
+      console.log(node);
+      let distance = findDistance({
+        sourceElementId: referenceElement.id,
+        sourceElementPosition: referenceElement.position,
+        targetElementId: node.id,
+        targetElementPosition: node.position,
+        nodes: nodes,
+        links: links,
+      });
+      return distance;
+    }
+  });
+  distances = await Promise.all(distances);
+  return distances;
 }
 
-export async function buildRows({ isListOrdered, orderedList, listOfElements, links, rows, setTableRows }) {
-    console.log("buildRows@findPaths.js")
-    // This function is used in pages/comparisonView.js to create the rows that will be displayed.
-    // it is in there because it needs to be deployed after isListOrdered becomes true,
-    // and using an useEffect inside CreateTable was too messy.
-    if (isListOrdered && !(orderedList.length < listOfElements.length) && rows.length == 0) {
-        let nodes = []
-        let positionDictionary = ({})
-        orderedList.forEach((id, pos) => {
-            nodes.push({ ...listOfElements[id], position: pos })
-            positionDictionary[id] = pos
-        })
-        links = links.map(link => ({
-            ...link,
-            sourceElementPosition: positionDictionary[link.source],
-            targetElementPosition: positionDictionary[link.target]
-        }))
+export async function buildRows({
+  isListOrdered,
+  orderedList,
+  listOfElements,
+  links,
+  rows,
+  setTableRows,
+}) {
+  console.log("buildRows@findPaths.js");
+  // This function is used in pages/comparisonView.js to create the rows that will be displayed.
+  // it is in there because it needs to be deployed after isListOrdered becomes true,
+  // and using an useEffect inside CreateTable was too messy.
+  if (
+    isListOrdered &&
+    !(orderedList.length < listOfElements.length) &&
+    rows.length == 0
+  ) {
+    let nodes = [];
+    let positionDictionary = {};
+    orderedList.forEach((id, pos) => {
+      nodes.push({ ...listOfElements[id], position: pos });
+      positionDictionary[id] = pos;
+    });
+    links = links.map((link) => ({
+      ...link,
+      sourceElementPosition: positionDictionary[link.source],
+      targetElementPosition: positionDictionary[link.target],
+    }));
 
-        let distances = await findDistancesForAllElements({ nodes, links })
-        rows = nodes.map((element, i) => ({
-            id: numToAlphabeticalString(element.position),
-            position: element.position,
-            name: element.name,
-            distances: distances[i]
-        }))
-        console.log(rows)
-        setTableRows(rows)
-    }
+    let distances = await findDistancesForAllElements({ nodes, links });
+    rows = nodes.map((element, i) => ({
+      id: numToAlphabeticalString(element.position),
+      position: element.position,
+      name: element.name,
+      distances: distances[i],
+    }));
+    console.log(rows);
+    setTableRows(rows);
+  }
 }
 
 export function CreateTable({ tableRows }) {
-    /* This function receives a list of rows, and displays them nicely. */
-    function abridgeArrayAndDisplay(array) {
-        let newArray
-        let formatForDisplay
-        if (array.length > 10) {
-            newArray = array.slice(0, 9)
-            formatForDisplay = newArray.map(d => formatLargeOrSmall(d))
-            formatForDisplay[9] = "..."
-        } else {
-            newArray = array
-            formatForDisplay = newArray.map(d => formatLargeOrSmall(d))
-        }
-        let result = JSON.stringify(formatForDisplay, null, 2).replaceAll(`"`, "")
-        return result
+  /* This function receives a list of rows, and displays them nicely. */
+  function abridgeArrayAndDisplay(array) {
+    let newArray;
+    let formatForDisplay;
+    if (array.length > 10) {
+      newArray = array.slice(0, 9);
+      formatForDisplay = newArray.map((d) => formatLargeOrSmall(d));
+      formatForDisplay[9] = "...";
+    } else {
+      newArray = array;
+      formatForDisplay = newArray.map((d) => formatLargeOrSmall(d));
     }
-    return (
-        <div>
-            <table className="w-full">
-                <thead>
-                    <tr >
-                        <th >Id</th>
-                        <th>&nbsp;&nbsp;&nbsp;</th>
-                        <th >Position</th>
-                        <th>&nbsp;&nbsp;&nbsp;</th>
-                        <th >Element</th>
-                        <th> &nbsp;&nbsp;&nbsp;</th>
-                        <th >Possible relative values</th>
-                        <th> &nbsp;&nbsp;&nbsp;</th>
-                        <th >Average relative value</th>
-                    </tr>
-                </thead>
-                <tbody>
-                    {tableRows.map(row => <tr key={row.id}>
-                        <td className="" >{row.id}</td>
-                        <td>&nbsp;&nbsp;&nbsp;</td>
-                        <td className="" >{row.position}</td>
-                        <td>&nbsp;&nbsp;&nbsp;</td>
-                        <td className="">{row.name}</td>
-                        <td>&nbsp;&nbsp;&nbsp;</td>
-                        <td className="">{abridgeArrayAndDisplay(row.distances)}</td>
-                        <td>&nbsp;&nbsp;&nbsp;</td>
-                        <td className="">{formatLargeOrSmall(avg(row.distances))}</td>
-                    </tr>
-                    )}
-                </tbody>
-            </table>
-        </div>
-    )
-
+    let result = JSON.stringify(formatForDisplay, null, 2).replaceAll(`"`, "");
+    return result;
+  }
+  return (
+    <div>
+      <table className="w-full">
+        <thead>
+          <tr>
+            <th>Id</th>
+            <th>&nbsp;&nbsp;&nbsp;</th>
+            <th>Position</th>
+            <th>&nbsp;&nbsp;&nbsp;</th>
+            <th>Element</th>
+            <th> &nbsp;&nbsp;&nbsp;</th>
+            <th>Possible relative values</th>
+            <th> &nbsp;&nbsp;&nbsp;</th>
+            <th>Average relative value</th>
+          </tr>
+        </thead>
+        <tbody>
+          {tableRows.map((row) => (
+            <tr key={row.id}>
+              <td className="">{row.id}</td>
+              <td>&nbsp;&nbsp;&nbsp;</td>
+              <td className="">{row.position}</td>
+              <td>&nbsp;&nbsp;&nbsp;</td>
+              <td className="">{row.name}</td>
+              <td>&nbsp;&nbsp;&nbsp;</td>
+              <td className="">{abridgeArrayAndDisplay(row.distances)}</td>
+              <td>&nbsp;&nbsp;&nbsp;</td>
+              <td className="">
+                {formatLargeOrSmall(geomMean(row.distances))}
+              </td>
+            </tr>
+          ))}
+        </tbody>
+      </table>
+    </div>
+  );
 }
 
 /* Testing */
@@ -300,4 +343,5 @@ console.log(JSON.stringify(paths, null, 2))
 /*
 let distances = findDistance({sourceElementId:2, targetElementId:4, links, nodes})
 console.log(distances)
-*/
+*/
+

lib/labeledGraph.js

@@ -1,145 +1,171 @@
 import React, { useState, useEffect } from "react";
-import * as d3 from 'd3';
-import { toLocale, truncateValueForDisplay, numToAlphabeticalString, formatLargeOrSmall } from "./utils.js"
+import * as d3 from "d3";
+import {
+  toLocale,
+  truncateValueForDisplay,
+  numToAlphabeticalString,
+  formatLargeOrSmall,
+} from "./utils.js";
 
 let getlength = (number) => number.toString().length;
 
 export function removeOldSvg() {
-    d3.select("#graph").select("svg").remove();
+  d3.select("#graph").select("svg").remove();
 }
 
 function drawGraphInner({ nodes, links }) {
+  // List of node ids for convenience
+  var nodeids = nodes.map((node) => node.id);
+  var positionById = {};
+  nodeids.forEach((nodeid, i) => (positionById[nodeid] = i));
+  console.log("NodeIds/positionById");
+  console.log(nodeids);
+  console.log(positionById);
 
-    // List of node ids for convenience
-    var nodeids = nodes.map(node => node.id)
-    var positionById = {}
-    nodeids.forEach((nodeid, i) => positionById[nodeid] = i)
-    console.log("NodeIds/positionById")
-    console.log(nodeids)
-    console.log(positionById)
+  // Calculate the dimensions
+  // let margin = { top: 0, right: 30, bottom: 20, left: 30 };
+  // let width = 900 - margin.left - margin.right;
 
-    // Calculate the dimensions
-    // let margin = { top: 0, right: 30, bottom: 20, left: 30 };
-    // let width = 900 - margin.left - margin.right;
-   
-    let initialWindowWidth = window.innerWidth
-    let margin = { top: 0, right: 10, bottom: 30, left: 10 };
-    let width = initialWindowWidth*0.7 - margin.left - margin.right;
-    
-    var x = d3.scalePoint()
-        .range([0, width])
-        .domain(nodeids)
+  let initialWindowWidth = window.innerWidth;
+  let margin = { top: 0, right: 10, bottom: 30, left: 10 };
+  let width = initialWindowWidth * 0.8 - margin.left - margin.right;
 
-    let heights = links.map(link => {
-        let start = x(positionById[link.source])
-        let end = x(positionById[link.target])
-        return Math.abs(start - end) / 2 + 70 // Magic constant.
+  var x = d3.scalePoint().range([0, width]).domain(nodeids);
+
+  let heights = links.map((link) => {
+    let start = x(positionById[link.source]);
+    let end = x(positionById[link.target]);
+    return Math.abs(start - end) / 2 + 70; // Magic constant.
+  });
+  console.log(heights);
+  let maxheight = Math.max(...heights);
+  let height = maxheight - margin.top - margin.bottom;
+  console.log(`height: ${height}`);
+
+  // Build the d3 graph
+
+  removeOldSvg();
+  var svg = d3
+    .select("#graph")
+    .append("svg")
+    .attr("width", width + margin.left + margin.right)
+    .attr("height", height + margin.top + margin.bottom)
+    .append("g")
+    .attr("transform", "translate(" + margin.left + "," + margin.top + ")");
+
+  // A linear scale to position the nodes on the X axis
+
+  // Add the circle for the nodes
+  svg
+    .selectAll("mynodes")
+    .data(nodes)
+    .enter()
+    .append("circle")
+    .attr("cx", function (d) {
+      return x(d.id);
     })
-    console.log(heights)
-    let maxheight = Math.max(...heights)
-    let height = maxheight - margin.top - margin.bottom;
-    console.log(`height: ${height}`)
+    .attr("cy", height - 30)
+    .attr("r", 8)
+    .style("fill", "#69b3a2");
 
-    // Build the d3 graph
+  // And give them a label
+  svg
+    .selectAll("mylabels")
+    .data(nodes)
+    .enter()
+    .append("text")
+    .attr("x", function (d) {
+      return x(d.id);
+    })
+    .attr("y", height - 10)
+    .text(function (d) {
+      return numToAlphabeticalString(d.position);
+    })
+    .style("text-anchor", "middle");
 
-    removeOldSvg()
-    var svg = d3.select("#graph")
-        .append("svg")
-        .attr("width", width + margin.left + margin.right)
-        .attr("height", height + margin.top + margin.bottom)
-        .append("g")
-        .attr("transform", "translate(" + margin.left + "," + margin.top + ")");
+  // Add the links
+  svg
+    .selectAll("mylinks")
+    .data(links)
+    .enter()
+    .append("path")
+    .attr("d", function (d) {
+      let start = x(d.source);
+      // X position of start node on the X axis
+      let end = x(d.target);
+      // X position of end node
+      return (
+        [
+          "M",
+          start,
+          height - 30,
+          // the arc starts at the coordinate x=start, y=height-30 (where the starting node is)
+          "A",
+          // This means we're gonna build an elliptical arc
+          (start - end) / 2,
+          ",",
+          // Next 2 lines are the coordinates of the inflexion point. Height of this point is proportional with start - end distance
+          (start - end) / 2,
+          0,
+          0,
+          ",",
+          start < end ? 1 : 0,
+          end,
+          ",",
+          height - 30,
+        ]
+          // We always want the arc on top. So if end is before start, putting 0 here turn the arc upside down.
+          .join(" ")
+      );
+    })
+    .style("fill", "none")
+    .attr("stroke", "black");
 
-    // A linear scale to position the nodes on the X axis
-
-
-    // Add the circle for the nodes
-    svg
-        .selectAll("mynodes")
-        .data(nodes)
-        .enter()
-        .append("circle")
-        .attr("cx", function (d) { return (x(d.id)) })
-        .attr("cy", height - 30)
-        .attr("r", 8)
-        .style("fill", "#69b3a2")
-
-    // And give them a label
-    svg
-        .selectAll("mylabels")
-        .data(nodes)
-        .enter()
-        .append("text")
-        .attr("x", function (d) { return (x(d.id)) })
-        .attr("y", height - 10)
-        .text(function (d) { return numToAlphabeticalString(d.position) })
-        .style("text-anchor", "middle")
-
-    // Add the links
-    svg
-        .selectAll('mylinks')
-        .data(links)
-        .enter()
-        .append('path')
-        .attr('d', function (d) {
-            let start = x(d.source)
-            // X position of start node on the X axis
-            let end = x(d.target)
-            // X position of end node
-            return ['M',
-                start,
-                height - 30,
-                // the arc starts at the coordinate x=start, y=height-30 (where the starting node is)
-                'A',
-                // This means we're gonna build an elliptical arc
-                (start - end) / 2, ',',
-                // Next 2 lines are the coordinates of the inflexion point. Height of this point is proportional with start - end distance
-                (start - end) / 2, 0, 0, ',',
-                start < end ? 1 : 0, end, ',', height - 30]
-                // We always want the arc on top. So if end is before start, putting 0 here turn the arc upside down.
-                .join(' ');
-        })
-        .style("fill", "none")
-        .attr("stroke", "black")
-
-    // labels for links
-    svg
-        .selectAll('mylinks')
-        .data(links)
-        .enter()
-        .append("text")
-        .attr("x", function (d) {
-            let start = x(d.source)
-            // X position of start node on the X axis
-            let end = x(d.target)
-            // X position of end node
-            return start + (end - start) / 2 //-4*getlength(d.distance)
-        })
-        .attr("y", function (d) {
-            let start = x(d.source)
-            // X position of start node on the X axis
-            let end = x(d.target)
-            // X position of end node
-            return height - 32 - (Math.abs(start - end) / 2)//height-30
-        })
-        .text(function (d) {
-            return formatLargeOrSmall(Number(d.distance))
-            // return (truncateValueForDisplay(Number(d.distance)))
-            //return(Number(d.distance).toPrecision(2).toString())
-        })
-        .style("text-anchor", "middle")
+  // labels for links
+  svg
+    .selectAll("mylinks")
+    .data(links)
+    .enter()
+    .append("text")
+    .attr("x", function (d) {
+      let start = x(d.source);
+      // X position of start node on the X axis
+      let end = x(d.target);
+      // X position of end node
+      return start + (end - start) / 2; //-4*getlength(d.distance)
+    })
+    .attr("y", function (d) {
+      let start = x(d.source);
+      // X position of start node on the X axis
+      let end = x(d.target);
+      // X position of end node
+      return height - 32 - Math.abs(start - end) / 2; //height-30
+    })
+    .text(function (d) {
+      return formatLargeOrSmall(Number(d.distance));
+      // return (truncateValueForDisplay(Number(d.distance)))
+      //return(Number(d.distance).toPrecision(2).toString())
+    })
+    .style("text-anchor", "middle");
 }
 
-export function DrawGraph({ isListOrdered, orderedList, listOfElements, links }) {
-    if (isListOrdered) {
-        let nodes = orderedList.map((id, pos) => ({ ...listOfElements[id], position: pos }))
-        drawGraphInner({ nodes, links });
-    }
-    return (
-        <div>
-            <div id="graph">
-            </div>
-        </div>
-    );
+export function DrawGraph({
+  isListOrdered,
+  orderedList,
+  listOfElements,
+  links,
+}) {
+  if (isListOrdered) {
+    let nodes = orderedList.map((id, pos) => ({
+      ...listOfElements[id],
+      position: pos,
+    }));
+    drawGraphInner({ nodes, links });
+  }
+  return (
+    <div>
+      <div id="graph"></div>
+    </div>
+  );
+}
 
-}

lib/utils.js

@@ -1,78 +1,94 @@
-import crypto from "crypto"
+import crypto from "crypto";
 
-export const hashString = (string) => crypto.createHash('md5').update(string).digest('hex');
-const id = x => x
-export const transformSliderValueToActualValue = id
-export const transformSliderValueToPracticalValue = id
+export const hashString = (string) =>
+  crypto.createHash("md5").update(string).digest("hex");
+const id = (x) => x;
+export const transformSliderValueToActualValue = id;
+export const transformSliderValueToPracticalValue = id;
 
-export const _transformSliderValueToActualValue = value => 10 ** value //>= 2 ? Math.round(10 ** value) : Math.round(10 * 10 ** value) / 10
-export const toLocale = x => Number(x).toLocaleString()
-export const truncateValueForDisplay = value => {
-    if (value > 10) {
-        return Number(Math.round(value).toPrecision(2))
-    } else if (value > 1) {
-        return Math.round(value * 10) / 10
-    } else if (value < 1) {
-
-    }
-}
-export const _transformSliderValueToPracticalValue = value => truncateValueForDisplay(transformSliderValueToActualValue(value))
+export const _transformSliderValueToActualValue = (value) => 10 ** value; //>= 2 ? Math.round(10 ** value) : Math.round(10 * 10 ** value) / 10
+export const toLocale = (x) => Number(x).toLocaleString();
+export const truncateValueForDisplay = (value) => {
+  if (value > 10) {
+    return Number(Math.round(value).toPrecision(2));
+  } else if (value > 1) {
+    return Math.round(value * 10) / 10;
+  } else if (value < 1) {
+  }
+};
+export const _transformSliderValueToPracticalValue = (value) =>
+  truncateValueForDisplay(transformSliderValueToActualValue(value));
 
 export function sleep(ms) {
-    return new Promise(resolve => setTimeout(resolve, ms));
+  return new Promise((resolve) => setTimeout(resolve, ms));
 }
 
 export function numToAlphabeticalString(num) {
-    // https://stackoverflow.com/questions/45787459/convert-number-to-alphabet-string-javascript/45787487
-    num = num + 1
-    var s = '', t;
-    while (num > 0) {
-        t = (num - 1) % 26;
-        s = String.fromCharCode(65 + t) + s;
-        num = (num - t) / 26 | 0;
-    }
-    return `#${s}` || undefined;
+  // https://stackoverflow.com/questions/45787459/convert-number-to-alphabet-string-javascript/45787487
+  num = num + 1;
+  var s = "",
+    t;
+  while (num > 0) {
+    t = (num - 1) % 26;
+    s = String.fromCharCode(65 + t) + s;
+    num = ((num - t) / 26) | 0;
+  }
+  return `#${s}` || undefined;
 }
 
 export function formatLargeOrSmall(num) {
-    if (num > 1) {
-        return toLocale(truncateValueForDisplay(num))
-    } else if (num > 0) {
-        return num.toFixed(-Math.floor(Math.log(num) / Math.log(10)) + 1);
-    } else if (num < -1) {
-        return num.toFixed(-Math.floor(Math.log(-num) / Math.log(10)) + 1);
-    } else {
-        return toLocale(num)//return "~0"
-
-    }
+  if (num > 1) {
+    return toLocale(truncateValueForDisplay(num));
+  } else if (num > 0) {
+    return num.toFixed(-Math.floor(Math.log(num) / Math.log(10)) + 1);
+  } else if (num < -1) {
+    return num.toFixed(-Math.floor(Math.log(-num) / Math.log(10)) + 1);
+  } else {
+    return toLocale(num); //return "~0"
+  }
 }
-const firstFewMaxMergeSortSequence = [0, 0, 1, 3, 5, 8, 11, 14, 17, 21, 25, 29, 33, 37, 41, 45, 49, 54, 59, 64, 69, 74, 79, 84, 89, 94, 99, 104, 109, 114, 119, 124, 129, 135, 141, 147, 153, 159, 165, 171, 177, 183, 189, 195, 201, 207, 213, 219, 225, 231, 237, 243, 249, 255, 261, 267, 273, 279, 285]
+const firstFewMaxMergeSortSequence = [
+  0, 0, 1, 3, 5, 8, 11, 14, 17, 21, 25, 29, 33, 37, 41, 45, 49, 54, 59, 64, 69,
+  74, 79, 84, 89, 94, 99, 104, 109, 114, 119, 124, 129, 135, 141, 147, 153, 159,
+  165, 171, 177, 183, 189, 195, 201, 207, 213, 219, 225, 231, 237, 243, 249,
+  255, 261, 267, 273, 279, 285,
+];
 
 export function maxMergeSortSteps(n) {
-    if (n < firstFewMaxMergeSortSequence.length) {
-        return firstFewMaxMergeSortSequence[n]
-    } else {
-        return maxMergeSortSteps(Math.floor(n / 2)) + maxMergeSortSteps(Math.ceil(n / 2)) + n - 1
-    }
+  if (n < firstFewMaxMergeSortSequence.length) {
+    return firstFewMaxMergeSortSequence[n];
+  } else {
+    return (
+      maxMergeSortSteps(Math.floor(n / 2)) +
+      maxMergeSortSteps(Math.ceil(n / 2)) +
+      n -
+      1
+    );
+  }
 }
 
 export function expectedNumMergeSortSteps(n) {
-    // https://cs.stackexchange.com/questions/82862/expected-number-of-comparisons-in-a-merge-step
-    // n-2 for each step, so (n-2) + (n-2)/2 + (n-2)/4 + ...
-    // ~ 2*(n-2) -1 = 2*n - 3
-    if (n == 0) {
-        return 0
-    } else if (n == 1) {
-        return 0
-    } else if (n == 2) {
-        return 1
-    } else if (n == 3) {
-        return 2
-    } else {
-        return Math.ceil((n ** 2) / (n + 2)) + expectedNumMergeSortSteps(Math.ceil(n / 2))
-    }
+  // https://cs.stackexchange.com/questions/82862/expected-number-of-comparisons-in-a-merge-step
+  // n-2 for each step, so (n-2) + (n-2)/2 + (n-2)/4 + ...
+  // ~ 2*(n-2) -1 = 2*n - 3
+  if (n == 0) {
+    return 0;
+  } else if (n == 1) {
+    return 0;
+  } else if (n == 2) {
+    return 1;
+  } else if (n == 3) {
+    return 2;
+  } else {
+    return (
+      Math.ceil(n ** 2 / (n + 2)) + expectedNumMergeSortSteps(Math.ceil(n / 2))
+    );
+  }
 }
 
-export const avg = arr => arr.reduce((a, b) => (a + b), 0) / arr.length
+export const avg = (arr) => arr.reduce((a, b) => a + b, 0) / arr.length;
 
-export const increasingList = (n) => Array.from(Array(n).keys())
+export const geomMean = (arr) =>
+  arr.reduce((a, b) => a * b, 1) ^ (1 / arr.length);
+
+export const increasingList = (n) => Array.from(Array(n).keys());