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88 Commits

Author SHA1 Message Date
Sam Nolan
fe5a42353e Add percentile graphed as environment option 2022-07-12 15:16:13 +10:00
Quinn Dougherty
9dcac8dd48 fixed \-1\ I had forgotten; added basic mean tests 2022-06-30 12:20:50 -04:00
Sam Nolan
2b8545ad04 Fix 1 + distribution having reverse ordered points 
Fixes #595
 2022-06-23 03:40:40 +00:00
Quinn Dougherty
12c0959f38 factored mixture construction into function 
Value: [1e-6 to 1e-4]
 2022-05-12 11:14:59 -04:00
Quinn Dougherty
f5e3701a79 Clean up for CR 
Value: [1e-7 to 43-4]
 2022-05-12 09:51:20 -04:00
Quinn Dougherty
e1e5e3305d Gained precision 
Value: [1e-3 to 2e-2]
 2022-05-11 15:46:57 -04:00
Quinn Dougherty
26afc96495 Tests are as good as I can get them 
Value: [1e-4 to 1e-2]
 2022-05-11 15:12:36 -04:00
Quinn Dougherty
95fe117ef0 Factored continuous part of normal and uniform kldivergence into it's 
own function

Value: [1e-4 to 1e-3]
 2022-05-11 14:19:45 -04:00
NunoSempere
4df4597ed3 fix: "Enrich" (add more x points) when integrating 
in order to get more numerical precision.
Note: not complete yet.

Value: [1e-3 to 3e-1]
 2022-05-11 12:23:36 -04:00
Quinn Dougherty
0b8da034c6 klDivergence on mixed distributions works for one test case 
Value: [1e-4 to 5e-2]
 2022-05-10 19:59:50 -04:00
Quinn Dougherty
29c1956e88 Response to CR 
Value: [1e-6 to 1e-4]
 2022-05-10 14:03:42 -04:00
Quinn Dougherty
f7690c33e0 Some cleanup 
Value: [1e-4 to 1e-2]
 2022-05-10 11:56:13 -04:00
Quinn Dougherty
15f1ebb429 KLDivergence on discretes is passing 
Value: [1e-3 to 2e-1]
 2022-05-10 11:27:59 -04:00
Quinn Dougherty
ccd55ef8f1 good evening, not working yet, but out of time for the night 
Value: [1e-6 to 1e-4]
 2022-05-09 19:17:27 -04:00
Quinn Dougherty
b2d80eef86 Removed negative infinity error handling 
Value: [1e-5 to 1e-3]
 2022-05-09 18:28:35 -04:00
Quinn Dougherty
06352357a2 response to CR 
Value: [1e-5 to 5e-3]
 2022-05-09 11:14:33 -04:00
Quinn Dougherty
28cb6b9c88 Final cleanup, but typescript is still borked 
Value: [1e-8 to 1e-6]
 2022-05-06 15:09:00 -04:00
Quinn Dougherty
bcf620337a Some Cleanup 
Btw, Nuño gets a lot of credit for the last commit!

Value: [1e-2 to 8e-2]
 2022-05-06 14:21:53 -04:00
Quinn Dougherty
722bfc6366 All three tests pass 
- `uniform` `toPointSet` method has been changed for numerical
stability.

Value: [1e-1 to 1.75e0]
 2022-05-06 13:58:15 -04:00
NunoSempere
d9a40c973a feat: Get KL divergence working except in case of numerical errors () 
- Quinn was of great help here.
- I also left some dead code, which still has to be cleaned up
- There are still very annoying numerical errors, so I left one test
failing. These are due to how the interpolation is done
- Quinn to pick up from here

Value: [0.6 to 2]
 2022-05-06 12:26:51 -04:00
NunoSempere
5dd272fb0c tweak: Add tests for combineAlongSupportOfSecondArgument 2022-05-06 11:45:11 -04:00
Quinn Dougherty
dcf56d7bc6 combineAlongSupportOfSecondArgument implemented, tests still failing 
Value: [1e-4 to 4e-2]
 2022-05-05 20:02:12 -04:00
Quinn Dougherty
b49865d3aa progress on klDivergence (still working) 
Value: [1e-5 to 1e-2]
 2022-05-05 15:37:28 -04:00
Quinn Dougherty
32a881d06a Call Jstat for mean instead of calculate it 
Value: [1e-8 to 1e-4]
 2022-05-05 10:38:33 -04:00
Quinn Dougherty
dd942fe29e cleanup; CR 
Value: [1e-9 to 1e-5]
 2022-05-04 18:19:47 -04:00
Quinn Dougherty
3fcc82442d Completed renaming to KLDivergence 
Value: [1e-8 to 1e-4]
 2022-05-04 12:21:30 -04:00
Quinn Dougherty
0baeedfb46 pointwiseSubtract test; logscale test 
Value: [1e-5 to 5e-4]
 2022-05-04 11:42:51 -04:00
Quinn Dougherty
20adc4e25a describe and test strings. 2022-05-02 18:40:34 -04:00
Quinn Dougherty
2d84805f88 Added infinity error; fixed infinities in logs 
Value: [1e-3 to 3e-2]
 2022-05-02 17:15:23 -04:00
Quinn Dougherty
db3acbf96c Added extra multiplicative factor in logScore integrand 
Value: [8e-2 to 7e-1]

migrated intregrand from `log(predicted / answer)` to `answer *
log(predicted / answer)`
 2022-05-02 13:40:34 -04:00
Ozzie Gooen
2eec389b55 Added docstrings and cleanup 2022-04-28 07:56:23 -04:00
Ozzie Gooen
335d0b5d04 Cleaned tests 2022-04-28 07:36:53 -04:00
Ozzie Gooen
5025f2d55f Refactor of splitContinuousAndDiscrete to allow for more customization 2022-04-27 18:34:37 -04:00
Quinn Dougherty
b8a2ecc7f0 Merge remote-tracking branch 'origin/develop' into normalize-improvements 2022-04-27 12:38:08 -04:00
Sam Nolan
350e420884 Add isNormalized to Continuous 2022-04-26 13:25:45 -04:00
Sam Nolan
e47deb8433 Translate pmf to pdf for kde 2022-04-26 12:22:31 -04:00
Ozzie Gooen
0b42604ea7 First attempt at fixing tests 2022-04-26 11:59:07 -04:00
Ozzie Gooen
d84420b1ff Merge branch 'develop' into normalize-improvements 
* develop:
  hotfix: codecov stuff in `.npmignore`
  Rename flip argument to be more descriptive
  Fix pointwise not commuting for subtraction
  Fix missing paramater in test
  Rename AlgebraicShapeCombination test case
  Fixed package versions in `website/package.json`
  Refactor and rename checkOrdered
  Moved dependencies to devDependencies; updated versions
  rm react-codejar
  Mistake in #371
  Fix build issues in components
  Move dependencies to devDependencies
  Ensure xyShape is ordered by x coordinates when multiplying by negatives
  ⬆️ Bump @types/node from 17.0.25 to 17.0.26
  ⬆️ Bump antd from 4.19.5 to 4.20.0
  Turned error into actual error
  Show correct errors early on when log(distribution) has bad arguments
  Fix subtraction not commuting under pointsets
 2022-04-25 21:59:45 -04:00
Ozzie Gooen
2c1aff25d3 Added basic functins to SampleSetDist 2022-04-25 21:46:40 -04:00
Sam Nolan
6bfecf2204 Rename flip argument to be more descriptive 2022-04-25 15:55:25 -04:00
Sam Nolan
aa192883e2 Fix missing paramater in test 
Value: [0.001 to 0.01]
 2022-04-25 15:18:18 -04:00
Sam Nolan
f58def8585 Rename AlgebraicShapeCombination test case 2022-04-25 14:52:52 -04:00
Sam Nolan
f9c02ba626 Refactor and rename checkOrdered 2022-04-25 14:50:45 -04:00
Sam Nolan
d7151907d3 Ensure xyShape is ordered by x coordinates when multiplying by negatives 
Value: [0.00001 to 0.0005]
 2022-04-25 11:44:50 -04:00
Ozzie Gooen
5563a5dc40 Prettier 2022-04-23 19:18:02 -04:00
Ozzie Gooen
217361b843 Tried to fix tests of math issues 2022-04-23 19:07:32 -04:00
Sam Nolan
4544268429 Clean up means testing to remove some duplication 2022-04-23 14:25:08 -04:00
Sam Nolan
c7e601e15b Remove NaN from pointwise operations 2022-04-23 14:09:06 -04:00
Sam Nolan
98bf4f81c7 Rename assertOk to toExn 2022-04-23 10:30:03 -04:00
Sam Nolan
508f673873 Change NaN operations to results 
- Also deleting old GenericDist_Types
- Also removing some string errors
 2022-04-22 16:27:17 -04:00