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1023 Commits

Author SHA1 Message Date
Ozzie Gooen
396bf5bf00
Merge pull request #501 from quantified-uncertainty/kldivergence-discrete 
`klDivergence` on discrete distributions
 2022-05-10 15:35:49 -04:00
Quinn Dougherty
3f30bddfc0 Sidebar order of pages; adjusted title/subtitle; cleanup 
Value: [1e-7 to 1e-3]
 2022-05-10 15:23:04 -04:00
Quinn Dougherty
29c1956e88 Response to CR 
Value: [1e-6 to 1e-4]
 2022-05-10 14:03:42 -04:00
Quinn Dougherty
744d5e0ad1 CodeQL run only via cron; waste added to gallery 
Value: [1e-4 to 1e-3]
 2022-05-10 13:29:54 -04:00
Sam Nolan
ccb6938ad4 Lint fix 2022-05-10 16:24:08 +00:00
Sam Nolan
930340e2f1 Add default environment as export 2022-05-10 16:20:31 +00:00
Sam Nolan
8d391f789d Keep props consistent 2022-05-10 16:16:36 +00:00
Sam Nolan
70ea9c1b14 Make optional arguments actually optional 2022-05-10 16:08:12 +00:00
Sam Nolan
07b93e5080 Merge branch 'develop' into function-charts 2022-05-10 15:57:59 +00:00
Quinn Dougherty
f7690c33e0 Some cleanup 
Value: [1e-4 to 1e-2]
 2022-05-10 11:56:13 -04:00
Sam Nolan
e058e315ad Function charting 2022-05-10 15:52:13 +00:00
Quinn Dougherty
15f1ebb429 KLDivergence on discretes is passing 
Value: [1e-3 to 2e-1]
 2022-05-10 11:27:59 -04:00
dependabot[bot]
0663469208
⬆️ Bump webpack from 5.72.0 to 5.72.1 
Bumps [webpack](https://github.com/webpack/webpack) from 5.72.0 to 5.72.1.
- [Release notes](https://github.com/webpack/webpack/releases)
- [Commits](https://github.com/webpack/webpack/compare/v5.72.0...v5.72.1)

---
updated-dependencies:
- dependency-name: webpack
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
 2022-05-10 14:50:15 +00:00
Quinn Dougherty
ccd55ef8f1 good evening, not working yet, but out of time for the night 
Value: [1e-6 to 1e-4]
 2022-05-09 19:17:27 -04:00
Quinn Dougherty
b2d80eef86 Removed negative infinity error handling 
Value: [1e-5 to 1e-3]
 2022-05-09 18:28:35 -04:00
Ozzie Gooen
b07c6e6e9c
Merge pull request #499 from quantified-uncertainty/component-stats 
Summary tables
 2022-05-09 16:36:48 -04:00
Sam Nolan
ca09650151 Fix number formatting for summary tables 2022-05-09 19:55:57 +00:00
Quinn Dougherty
59edd7122e wrapped error in function 
Value: [1e-5 to 1e-3]
 2022-05-09 15:24:46 -04:00
Sam Nolan
aab6ac4940 Add an optional simple summary table 2022-05-09 19:21:54 +00:00
Quinn Dougherty
814a5f2c58 mx polymorphism 
Value: [1e-3 to 2e-2]
 2022-05-09 15:19:56 -04:00
Sam Nolan
19ebc322ad Merge branch 'develop' into component-stats 2022-05-09 18:30:09 +00:00
Quinn
964eba4461
Merge pull request #496 from quantified-uncertainty/dependabot/npm_and_yarn/types/react-18.0.9 
⬆️ Bump @types/react from 18.0.8 to 18.0.9
 2022-05-09 14:25:20 -04:00
Ozzie Gooen
d07c3e7e81
Merge pull request #495 from quantified-uncertainty/merge-bindings 
Merge bindings function
 2022-05-09 14:12:24 -04:00
Quinn Dougherty
06352357a2 response to CR 
Value: [1e-5 to 5e-3]
 2022-05-09 11:14:33 -04:00
dependabot[bot]
de142e4a65
⬆️ Bump @types/react from 18.0.8 to 18.0.9 
Bumps [@types/react](https://github.com/DefinitelyTyped/DefinitelyTyped/tree/HEAD/types/react) from 18.0.8 to 18.0.9.
- [Release notes](https://github.com/DefinitelyTyped/DefinitelyTyped/releases)
- [Commits](https://github.com/DefinitelyTyped/DefinitelyTyped/commits/HEAD/types/react)

---
updated-dependencies:
- dependency-name: "@types/react"
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
 2022-05-09 14:33:42 +00:00
Sam Nolan
2860f28e32 Merge bindings function 
Value: [0.0001 to 0.005]
 2022-05-09 14:18:50 +00:00
Quinn Dougherty
7337af7faf un-^ the mathjs version; un skipLibCheck the tsconfig.json 
Value: [1e-6 t o1e-4]
 2022-05-06 15:22:56 -04:00
Quinn Dougherty
2b7e5b8245 skipLibCheck: true 
(Needed for `mocha` transitive dependency build failure)

Value: [1e-6 to 1e-4]
 2022-05-06 15:19:09 -04:00
Quinn Dougherty
28cb6b9c88 Final cleanup, but typescript is still borked 
Value: [1e-8 to 1e-6]
 2022-05-06 15:09:00 -04:00
Quinn Dougherty
c9024fad40 Merge remote-tracking branch 'origin/develop' into log-score-attempt 2022-05-06 14:22:42 -04:00
Quinn Dougherty
bcf620337a Some Cleanup 
Btw, Nuño gets a lot of credit for the last commit!

Value: [1e-2 to 8e-2]
 2022-05-06 14:21:53 -04:00
Quinn Dougherty
722bfc6366 All three tests pass 
- `uniform` `toPointSet` method has been changed for numerical
stability.

Value: [1e-1 to 1.75e0]
 2022-05-06 13:58:15 -04:00
dependabot[bot]
e89f6dcab4
⬆️ Bump @docusaurus/preset-classic 
Bumps [@docusaurus/preset-classic](https://github.com/facebook/docusaurus/tree/HEAD/packages/docusaurus-preset-classic) from 2.0.0-beta.19 to 2.0.0-beta.20.
- [Release notes](https://github.com/facebook/docusaurus/releases)
- [Changelog](https://github.com/facebook/docusaurus/blob/main/CHANGELOG.md)
- [Commits](https://github.com/facebook/docusaurus/commits/v2.0.0-beta.20/packages/docusaurus-preset-classic)

---
updated-dependencies:
- dependency-name: "@docusaurus/preset-classic"
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
 2022-05-06 16:35:11 +00:00
Quinn
e419231834
Merge pull request #492 from quantified-uncertainty/dependabot/npm_and_yarn/react-vega-7.5.1 
⬆️ Bump react-vega from 7.5.0 to 7.5.1
 2022-05-06 12:33:57 -04:00
NunoSempere
d9a40c973a feat: Get KL divergence working except in case of numerical errors () 
- Quinn was of great help here.
- I also left some dead code, which still has to be cleaned up
- There are still very annoying numerical errors, so I left one test
failing. These are due to how the interpolation is done
- Quinn to pick up from here

Value: [0.6 to 2]
 2022-05-06 12:26:51 -04:00
NunoSempere
5dd272fb0c tweak: Add tests for combineAlongSupportOfSecondArgument 2022-05-06 11:45:11 -04:00
NunoSempere
cc3db79a2a feat: kl function but no dealing with errors yet 2022-05-06 10:49:04 -04:00
dependabot[bot]
875d6cbb2c
⬆️ Bump react-vega from 7.5.0 to 7.5.1 
Bumps [react-vega](https://github.com/vega/react-vega) from 7.5.0 to 7.5.1.
- [Release notes](https://github.com/vega/react-vega/releases)
- [Changelog](https://github.com/vega/react-vega/blob/master/CHANGELOG.md)
- [Commits](https://github.com/vega/react-vega/compare/v7.5.0...v7.5.1)

---
updated-dependencies:
- dependency-name: react-vega
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
 2022-05-06 14:37:03 +00:00
dependabot[bot]
da6fb8fe8d
⬆️ Bump @docusaurus/core from 2.0.0-beta.19 to 2.0.0-beta.20 
Bumps [@docusaurus/core](https://github.com/facebook/docusaurus/tree/HEAD/packages/docusaurus) from 2.0.0-beta.19 to 2.0.0-beta.20.
- [Release notes](https://github.com/facebook/docusaurus/releases)
- [Changelog](https://github.com/facebook/docusaurus/blob/main/CHANGELOG.md)
- [Commits](https://github.com/facebook/docusaurus/commits/v2.0.0-beta.20/packages/docusaurus)

---
updated-dependencies:
- dependency-name: "@docusaurus/core"
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
 2022-05-06 14:36:36 +00:00
NunoSempere
b393af8762 tweak: start building new function from scratch 2022-05-06 10:04:41 -04:00
NunoSempere
87d6f8d4f6 fix: change integrand check order in KL divergence code 2022-05-06 09:49:42 -04:00
Quinn Dougherty
fd17da83b8 Merge remote-tracking branch 'origin/develop' into log-score-attempt 2022-05-05 20:42:39 -04:00
Quinn Dougherty
38d1c7aa61 Cleanup with option<(float, float, float)> 
Value: [1e-5 to 1e-3]
 2022-05-05 20:42:05 -04:00
Quinn Dougherty
dcf56d7bc6 combineAlongSupportOfSecondArgument implemented, tests still failing 
Value: [1e-4 to 4e-2]
 2022-05-05 20:02:12 -04:00
Quinn Dougherty
b49865d3aa progress on klDivergence (still working) 
Value: [1e-5 to 1e-2]
 2022-05-05 15:37:28 -04:00
dependabot[bot]
a92e32b0ec
⬆️ Bump @docusaurus/preset-classic 
Bumps [@docusaurus/preset-classic](https://github.com/facebook/docusaurus/tree/HEAD/packages/docusaurus-preset-classic) from 2.0.0-beta.18 to 2.0.0-beta.19.
- [Release notes](https://github.com/facebook/docusaurus/releases)
- [Changelog](https://github.com/facebook/docusaurus/blob/main/CHANGELOG.md)
- [Commits](https://github.com/facebook/docusaurus/commits/v2.0.0-beta.19/packages/docusaurus-preset-classic)

---
updated-dependencies:
- dependency-name: "@docusaurus/preset-classic"
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
 2022-05-05 14:55:35 +00:00
Quinn
6664e65e6c
Merge pull request #490 from quantified-uncertainty/dependabot/npm_and_yarn/docusaurus/core-2.0.0-beta.19 
⬆️ Bump @docusaurus/core from 2.0.0-beta.18 to 2.0.0-beta.19
 2022-05-05 10:54:31 -04:00
dependabot[bot]
690467d0be
⬆️ Bump @docusaurus/core from 2.0.0-beta.18 to 2.0.0-beta.19 
Bumps [@docusaurus/core](https://github.com/facebook/docusaurus/tree/HEAD/packages/docusaurus) from 2.0.0-beta.18 to 2.0.0-beta.19.
- [Release notes](https://github.com/facebook/docusaurus/releases)
- [Changelog](https://github.com/facebook/docusaurus/blob/main/CHANGELOG.md)
- [Commits](https://github.com/facebook/docusaurus/commits/v2.0.0-beta.19/packages/docusaurus)

---
updated-dependencies:
- dependency-name: "@docusaurus/core"
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
 2022-05-05 14:46:10 +00:00
dependabot[bot]
24b2aefce7
⬆️ Bump webpack-dev-server from 4.8.1 to 4.9.0 
Bumps [webpack-dev-server](https://github.com/webpack/webpack-dev-server) from 4.8.1 to 4.9.0.
- [Release notes](https://github.com/webpack/webpack-dev-server/releases)
- [Changelog](https://github.com/webpack/webpack-dev-server/blob/master/CHANGELOG.md)
- [Commits](https://github.com/webpack/webpack-dev-server/compare/v4.8.1...v4.9.0)

---
updated-dependencies:
- dependency-name: webpack-dev-server
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
 2022-05-05 14:45:33 +00:00
Quinn Dougherty
32a881d06a Call Jstat for mean instead of calculate it 
Value: [1e-8 to 1e-4]
 2022-05-05 10:38:33 -04:00
Sam Nolan
72b7a7e274 squiggle-components 0.2.20 2022-05-04 22:59:58 +00:00
Ozzie Gooen
e866ff062c
Merge pull request #486 from quantified-uncertainty/no-types-arrays 
Always puts new elements on different lines.
 2022-05-04 18:51:47 -04:00
Sam Nolan
3898753b00 Change gradient of one color to solid color 2022-05-04 22:35:04 +00:00
Quinn Dougherty
dd942fe29e cleanup; CR 
Value: [1e-9 to 1e-5]
 2022-05-04 18:19:47 -04:00
Sam Nolan
a25c83edf8 Always puts new elements on different lines. 
Closes #480
 2022-05-04 21:55:22 +00:00
Umur Ozkul
99f54f596c ternary operator (tested) 2022-05-04 22:36:34 +02:00
Umur Ozkul
888b615445 Merge branch 'reducer-dev-F-ifthenelse' into ternary 
packages/squiggle-lang/src/rescript/Reducer/Reducer_Dispatch/Reducer_Dispatch_BuiltInMacros.res
packages/squiggle-lang/src/rescript/Reducer/Reducer_Expression/Reducer_Expression.res
packages/squiggle-lang/src/rescript/Reducer/Reducer_Expression/Reducer_Expression_Builder.res
packages/squiggle-lang/src/rescript/Reducer/Reducer_MathJs/Reducer_MathJs_ToExpression.res
 2022-05-04 21:51:15 +02:00
Umur Ozkul
8aa4248996 spelling 2022-05-04 21:23:40 +02:00
Quinn Dougherty
6211d3cfb0 Some sorta klDivergence conclusion 
Value: [1e-6 to 1e-3]
 2022-05-04 14:55:49 -04:00
Umur Ozkul
85b8333a09 Merge branch 'develop' into Umur-reducer-dev 2022-05-04 20:45:48 +02:00
Umur Ozkul
ad220ed2b4 foreign function interface 2022-05-04 20:44:46 +02:00
Quinn Dougherty
898547f3a3 klDivergence is now LogarithmWithThreshold 2022-05-04 13:53:32 -04:00
Quinn Dougherty
cfa83e552d Merge remote-tracking branch 'origin/develop' into log-score-attempt 2022-05-04 13:05:40 -04:00
Quinn Dougherty
c95c56cfb8 Added logScaleWithThreshold(eps) and completed renaming to 
`klDivergence`

Value: [1e-5 to 1e-3]
 2022-05-04 13:02:58 -04:00
Sam Nolan
801e4c23d1 v0.2.19 2022-05-04 16:50:08 +00:00
Ozzie Gooen
268f138dcf
Merge pull request #478 from quantified-uncertainty/reducer-dev 
Reducer dev: map, reduce, reduceReverse, keep
 2022-05-04 12:27:03 -04:00
Quinn Dougherty
236be470d5 Merge remote-tracking branch 'origin/develop' into log-score-attempt 2022-05-04 12:22:33 -04:00
Quinn Dougherty
3fcc82442d Completed renaming to KLDivergence 
Value: [1e-8 to 1e-4]
 2022-05-04 12:21:30 -04:00
Ozzie Gooen
7585bd3599
Merge pull request #479 from quantified-uncertainty/gamma-distribution 
Add Gamma distribution
 2022-05-04 12:01:28 -04:00
Quinn Dougherty
683439c7e5 Changed Ok(0) to Error(NegativeInfinityError). 
Value: [1e-7 to 1e-5]
 2022-05-04 11:59:46 -04:00
Quinn Dougherty
32f141abdc Renamed LogScoring to KLDivergence 
Value: [1e-7 to 1e-4]
 2022-05-04 11:54:23 -04:00
Sam Nolan
930c2d2b67 Add Gamma distribution 2022-05-04 15:53:41 +00:00
Quinn Dougherty
627616558a Made multiplicative factor in Scoring file rather than with bind 
calls

Value: [1e-5 to 7.5e-4]
 2022-05-04 11:48:20 -04:00
Ozzie Gooen
c7d37fc890
Merge pull request #475 from quantified-uncertainty/dependabot/npm_and_yarn/testing-library/react-13.2.0 
⬆️ Bump @testing-library/react from 13.1.1 to 13.2.0
 2022-05-04 11:47:23 -04:00
Quinn Dougherty
f5f5be2cfb ?? build broke, had to add a ModuleName. prefix to a constructor 
Value: [1e-7 to 1e-5]
 2022-05-04 11:43:44 -04:00
Quinn Dougherty
0baeedfb46 pointwiseSubtract test; logscale test 
Value: [1e-5 to 5e-4]
 2022-05-04 11:42:51 -04:00
Umur Ozkul
ea465c6047 Merge branch 'develop' into Umur-reducer-dev 2022-05-04 17:35:03 +02:00
Umur Ozkul
5de6aa8e0d map reduce reduceReverse reverse keep 2022-05-04 17:32:25 +02:00
dependabot[bot]
e561a47d51
⬆️ Bump @types/jest from 27.4.1 to 27.5.0 
Bumps [@types/jest](https://github.com/DefinitelyTyped/DefinitelyTyped/tree/HEAD/types/jest) from 27.4.1 to 27.5.0.
- [Release notes](https://github.com/DefinitelyTyped/DefinitelyTyped/releases)
- [Commits](https://github.com/DefinitelyTyped/DefinitelyTyped/commits/HEAD/types/jest)

---
updated-dependencies:
- dependency-name: "@types/jest"
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
 2022-05-04 14:41:05 +00:00
dependabot[bot]
c0512e5eed
⬆️ Bump @testing-library/react from 13.1.1 to 13.2.0 
Bumps [@testing-library/react](https://github.com/testing-library/react-testing-library) from 13.1.1 to 13.2.0.
- [Release notes](https://github.com/testing-library/react-testing-library/releases)
- [Changelog](https://github.com/testing-library/react-testing-library/blob/main/CHANGELOG.md)
- [Commits](https://github.com/testing-library/react-testing-library/compare/v13.1.1...v13.2.0)

---
updated-dependencies:
- dependency-name: "@testing-library/react"
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
 2022-05-04 14:40:32 +00:00
Umur Ozkul
ae48bd6420 pass reducer to dispatch 
to define functions that has lambda arguments, dispatching requires a
reducer
 2022-05-04 15:33:51 +02:00
Umur Ozkul
33ee0b27d5 remove inspect performance completely 
Redesign required on the function interface
 2022-05-04 15:14:34 +02:00
NunoSempere
526ee921b5 tweak: some tweaks to documentation, part 1/2 2022-05-03 17:22:08 -04:00
Quinn Dougherty
d5c9705811 Corrected log score 
Value: [5e-5 to 2e-2]
 2022-05-03 14:00:34 -04:00
Ozzie Gooen
94a1155264 Formatted rescript 2022-05-03 11:30:00 -04:00
Ozzie Gooen
02a2d96f8f Added appropriate code blocsk 2022-05-03 11:12:44 -04:00
Ozzie Gooen
c2155ef746 Merge branch 'develop' into documentation-refactors-april 
* develop: (72 commits)
  cases to handle with new parser. lambdas in arrays and records
  Note duplicate parameters
  Note infinite recursion
  Note infinite recursion
  Add array string and function viewers
  Recurse showTypes
  Pass showTypes and showControls in playground
  do not export private modules from Reducer module
  Allows hiding controls
  sam's monkeying
  fixed function f not bound
  Refactor and rename lambda in partial
  Make error message more descriptive
  Refactor and shrink effect code
  Make a tooltip to restrict users from log scales
  Add Patrial storybook and update partial bindings async
  Lint js
  Format and fix CI bugs
  Hotfix playground chart
  Real log scales
  ...
 2022-05-03 11:07:12 -04:00
Ozzie Gooen
b28df258e1 Ran formatter 2022-05-03 11:06:53 -04:00
Quinn Dougherty
cec4bbd334 fixed build 
Value: [1e-6 to 1e-4]
 2022-05-03 10:20:01 -04:00
Quinn Dougherty
6c815a62ff Merge remote-tracking branch 'origin/develop' into log-score-attempt 2022-05-03 10:17:17 -04:00
Quinn Dougherty
5d6de7b487 Response to CR 
Value: [1e-4 to 4e-3]
 2022-05-03 10:15:48 -04:00
Sam Nolan
6112487b78
Merge pull request #434 from quantified-uncertainty/reducer-dev 
Reducer dev
 2022-05-02 19:19:06 -04:00
Umur Ozkul
6dc101ef93 Merge branch 'Umur-reducer-dev' into reducer-dev 2022-05-03 00:45:39 +02:00
Umur Ozkul
88428c74af cases to handle with new parser. lambdas in arrays and records 2022-05-03 00:44:38 +02:00
Quinn Dougherty
20adc4e25a describe and test strings. 2022-05-02 18:40:34 -04:00
Umur Ozkul
c5ae846df4 Note duplicate parameters 2022-05-03 00:30:41 +02:00
Quinn Dougherty
96ed0b44bb skip the bad test 
Value: [1e-6 to 5e-4]
 2022-05-02 18:29:47 -04:00
Umur Ozkul
27cdb5fbda Merge branch 'Umur-reducer-dev' into reducer-dev 2022-05-03 00:19:12 +02:00
Umur Ozkul
78f46daed8 Note infinite recursion 2022-05-03 00:18:23 +02:00
Umur Ozkul
d26eaa2523 Note infinite recursion 2022-05-03 00:16:29 +02:00