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1053 Commits

Author SHA1 Message Date
Quinn Dougherty
978e149913 Initialized logScore and logScoreAgainstImproperPrior 
Value: [1e-5 to 6e-3]
 2022-05-12 13:11:51 -04:00
Quinn
937458cd05
Merge pull request #512 from quantified-uncertainty/kldivergence-mixed 
`klDivergence` on mixed distributions
 2022-05-12 11:26:01 -04:00
Quinn Dougherty
eee9a46c37 Improved comment for enrich 
Value: [1e-9 to 1e-6]
 2022-05-12 11:16:51 -04:00
Quinn Dougherty
12c0959f38 factored mixture construction into function 
Value: [1e-6 to 1e-4]
 2022-05-12 11:14:59 -04:00
dependabot[bot]
239f6b0f81
⬆️ Bump @testing-library/user-event from 14.1.1 to 14.2.0 
Bumps [@testing-library/user-event](https://github.com/testing-library/user-event) from 14.1.1 to 14.2.0.
- [Release notes](https://github.com/testing-library/user-event/releases)
- [Changelog](https://github.com/testing-library/user-event/blob/main/CHANGELOG.md)
- [Commits](https://github.com/testing-library/user-event/compare/v14.1.1...v14.2)

---
updated-dependencies:
- dependency-name: "@testing-library/user-event"
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
 2022-05-12 14:40:06 +00:00
Quinn Dougherty
f5e3701a79 Clean up for CR 
Value: [1e-7 to 43-4]
 2022-05-12 09:51:20 -04:00
Quinn Dougherty
b90a0e7a1a re-added ?, artefact from MC resolve mistake 
Value: [1e-7 to 1e-4]
 2022-05-11 15:48:50 -04:00
Quinn Dougherty
e1e5e3305d Gained precision 
Value: [1e-3 to 2e-2]
 2022-05-11 15:46:57 -04:00
Quinn Dougherty
26afc96495 Tests are as good as I can get them 
Value: [1e-4 to 1e-2]
 2022-05-11 15:12:36 -04:00
Quinn Dougherty
5cd8ff3f73 Merge remote-tracking branch 'origin/develop' into kldivergence-mixed 2022-05-11 14:20:08 -04:00
Quinn Dougherty
95fe117ef0 Factored continuous part of normal and uniform kldivergence into it's 
own function

Value: [1e-4 to 1e-3]
 2022-05-11 14:19:45 -04:00
Sam Nolan
c13f49a7bc Lint fix 2022-05-11 14:19:45 -04:00
Sam Nolan
a3402a42a4 Add default environment as export 2022-05-11 14:19:45 -04:00
Sam Nolan
4758fca19b Keep props consistent 2022-05-11 14:19:45 -04:00
Sam Nolan
b0c84450ff Make optional arguments actually optional 2022-05-11 14:19:45 -04:00
Sam Nolan
b2a972605d (rebase): Function charting 2022-05-11 14:19:36 -04:00
NunoSempere
5c9f57a24a fix: Attain parity with previous implementation 
This is achieved by not adding more points in between i
the points are already pretty close
 2022-05-11 12:56:56 -04:00
NunoSempere
599c14b32c tweak: Pass off to Quinn 2022-05-11 12:39:03 -04:00
NunoSempere
4df4597ed3 fix: "Enrich" (add more x points) when integrating 
in order to get more numerical precision.
Note: not complete yet.

Value: [1e-3 to 3e-1]
 2022-05-11 12:23:36 -04:00
dependabot[bot]
a2b5dbf6c3
⬆️ Bump @types/node from 17.0.31 to 17.0.32 
Bumps [@types/node](https://github.com/DefinitelyTyped/DefinitelyTyped/tree/HEAD/types/node) from 17.0.31 to 17.0.32.
- [Release notes](https://github.com/DefinitelyTyped/DefinitelyTyped/releases)
- [Commits](https://github.com/DefinitelyTyped/DefinitelyTyped/commits/HEAD/types/node)

---
updated-dependencies:
- dependency-name: "@types/node"
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
 2022-05-11 14:42:12 +00:00
Quinn Dougherty
0b8da034c6 klDivergence on mixed distributions works for one test case 
Value: [1e-4 to 5e-2]
 2022-05-10 19:59:50 -04:00
Ozzie Gooen
3cca106079
Merge pull request #504 from quantified-uncertainty/function-charts 
Function charting
 2022-05-10 18:57:18 -04:00
Quinn Dougherty
48fcd526ce Made Node Packages page in docs just reference github readmes 
Value: [1e-8 to 1e-4]
 2022-05-10 17:06:44 -04:00
Quinn Dougherty
b7e18b4f9d Simplified tree in squiggle-lang/src/rescript/Distributions 
Value: [1e-8 to 1e-4]
 2022-05-10 16:43:37 -04:00
Quinn Dougherty
465383205a Fixed lint 
Value: [1e-10 to 1e-6]
 2022-05-10 16:34:03 -04:00
Quinn Dougherty
216ede45b2 Fixed Bisect 
Value: [1e-5 to 1e-3]
 2022-05-10 16:27:34 -04:00
Quinn Dougherty
58a7cd769f Replaced ; with && in coverage reports. 
Value: [1e-7 to 1e-3]
 2022-05-10 16:13:49 -04:00
Quinn Dougherty
73a986d848 merge commit: merging in origin/develop 2022-05-10 16:06:33 -04:00
Quinn
a2a47560d7
Merge pull request #511 from quantified-uncertainty/mathjs-increment 
Re-added `^`-versioning to mathjs
 2022-05-10 16:05:39 -04:00
Quinn Dougherty
4ecb420a8b Re-added ^-versioning to mathjs 
Value: [1e-9 to 1e-5]
 2022-05-10 15:50:44 -04:00
Ozzie Gooen
396bf5bf00
Merge pull request #501 from quantified-uncertainty/kldivergence-discrete 
`klDivergence` on discrete distributions
 2022-05-10 15:35:49 -04:00
Quinn Dougherty
3f30bddfc0 Sidebar order of pages; adjusted title/subtitle; cleanup 
Value: [1e-7 to 1e-3]
 2022-05-10 15:23:04 -04:00
Quinn Dougherty
29c1956e88 Response to CR 
Value: [1e-6 to 1e-4]
 2022-05-10 14:03:42 -04:00
Quinn Dougherty
744d5e0ad1 CodeQL run only via cron; waste added to gallery 
Value: [1e-4 to 1e-3]
 2022-05-10 13:29:54 -04:00
Sam Nolan
ccb6938ad4 Lint fix 2022-05-10 16:24:08 +00:00
Sam Nolan
930340e2f1 Add default environment as export 2022-05-10 16:20:31 +00:00
Sam Nolan
8d391f789d Keep props consistent 2022-05-10 16:16:36 +00:00
Sam Nolan
70ea9c1b14 Make optional arguments actually optional 2022-05-10 16:08:12 +00:00
Sam Nolan
07b93e5080 Merge branch 'develop' into function-charts 2022-05-10 15:57:59 +00:00
Quinn Dougherty
f7690c33e0 Some cleanup 
Value: [1e-4 to 1e-2]
 2022-05-10 11:56:13 -04:00
Sam Nolan
e058e315ad Function charting 2022-05-10 15:52:13 +00:00
Quinn Dougherty
15f1ebb429 KLDivergence on discretes is passing 
Value: [1e-3 to 2e-1]
 2022-05-10 11:27:59 -04:00
dependabot[bot]
0663469208
⬆️ Bump webpack from 5.72.0 to 5.72.1 
Bumps [webpack](https://github.com/webpack/webpack) from 5.72.0 to 5.72.1.
- [Release notes](https://github.com/webpack/webpack/releases)
- [Commits](https://github.com/webpack/webpack/compare/v5.72.0...v5.72.1)

---
updated-dependencies:
- dependency-name: webpack
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
 2022-05-10 14:50:15 +00:00
Quinn Dougherty
ccd55ef8f1 good evening, not working yet, but out of time for the night 
Value: [1e-6 to 1e-4]
 2022-05-09 19:17:27 -04:00
Quinn Dougherty
b2d80eef86 Removed negative infinity error handling 
Value: [1e-5 to 1e-3]
 2022-05-09 18:28:35 -04:00
Ozzie Gooen
b07c6e6e9c
Merge pull request #499 from quantified-uncertainty/component-stats 
Summary tables
 2022-05-09 16:36:48 -04:00
Sam Nolan
ca09650151 Fix number formatting for summary tables 2022-05-09 19:55:57 +00:00
Quinn Dougherty
59edd7122e wrapped error in function 
Value: [1e-5 to 1e-3]
 2022-05-09 15:24:46 -04:00
Sam Nolan
aab6ac4940 Add an optional simple summary table 2022-05-09 19:21:54 +00:00
Quinn Dougherty
814a5f2c58 mx polymorphism 
Value: [1e-3 to 2e-2]
 2022-05-09 15:19:56 -04:00
Sam Nolan
19ebc322ad Merge branch 'develop' into component-stats 2022-05-09 18:30:09 +00:00
Quinn
964eba4461
Merge pull request #496 from quantified-uncertainty/dependabot/npm_and_yarn/types/react-18.0.9 
⬆️ Bump @types/react from 18.0.8 to 18.0.9
 2022-05-09 14:25:20 -04:00
Ozzie Gooen
d07c3e7e81
Merge pull request #495 from quantified-uncertainty/merge-bindings 
Merge bindings function
 2022-05-09 14:12:24 -04:00
Quinn Dougherty
06352357a2 response to CR 
Value: [1e-5 to 5e-3]
 2022-05-09 11:14:33 -04:00
dependabot[bot]
de142e4a65
⬆️ Bump @types/react from 18.0.8 to 18.0.9 
Bumps [@types/react](https://github.com/DefinitelyTyped/DefinitelyTyped/tree/HEAD/types/react) from 18.0.8 to 18.0.9.
- [Release notes](https://github.com/DefinitelyTyped/DefinitelyTyped/releases)
- [Commits](https://github.com/DefinitelyTyped/DefinitelyTyped/commits/HEAD/types/react)

---
updated-dependencies:
- dependency-name: "@types/react"
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
 2022-05-09 14:33:42 +00:00
Sam Nolan
2860f28e32 Merge bindings function 
Value: [0.0001 to 0.005]
 2022-05-09 14:18:50 +00:00
Quinn Dougherty
7337af7faf un-^ the mathjs version; un skipLibCheck the tsconfig.json 
Value: [1e-6 t o1e-4]
 2022-05-06 15:22:56 -04:00
Quinn Dougherty
2b7e5b8245 skipLibCheck: true 
(Needed for `mocha` transitive dependency build failure)

Value: [1e-6 to 1e-4]
 2022-05-06 15:19:09 -04:00
Quinn Dougherty
28cb6b9c88 Final cleanup, but typescript is still borked 
Value: [1e-8 to 1e-6]
 2022-05-06 15:09:00 -04:00
Quinn Dougherty
c9024fad40 Merge remote-tracking branch 'origin/develop' into log-score-attempt 2022-05-06 14:22:42 -04:00
Quinn Dougherty
bcf620337a Some Cleanup 
Btw, Nuño gets a lot of credit for the last commit!

Value: [1e-2 to 8e-2]
 2022-05-06 14:21:53 -04:00
Quinn Dougherty
722bfc6366 All three tests pass 
- `uniform` `toPointSet` method has been changed for numerical
stability.

Value: [1e-1 to 1.75e0]
 2022-05-06 13:58:15 -04:00
dependabot[bot]
e89f6dcab4
⬆️ Bump @docusaurus/preset-classic 
Bumps [@docusaurus/preset-classic](https://github.com/facebook/docusaurus/tree/HEAD/packages/docusaurus-preset-classic) from 2.0.0-beta.19 to 2.0.0-beta.20.
- [Release notes](https://github.com/facebook/docusaurus/releases)
- [Changelog](https://github.com/facebook/docusaurus/blob/main/CHANGELOG.md)
- [Commits](https://github.com/facebook/docusaurus/commits/v2.0.0-beta.20/packages/docusaurus-preset-classic)

---
updated-dependencies:
- dependency-name: "@docusaurus/preset-classic"
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
 2022-05-06 16:35:11 +00:00
Quinn
e419231834
Merge pull request #492 from quantified-uncertainty/dependabot/npm_and_yarn/react-vega-7.5.1 
⬆️ Bump react-vega from 7.5.0 to 7.5.1
 2022-05-06 12:33:57 -04:00
NunoSempere
d9a40c973a feat: Get KL divergence working except in case of numerical errors () 
- Quinn was of great help here.
- I also left some dead code, which still has to be cleaned up
- There are still very annoying numerical errors, so I left one test
failing. These are due to how the interpolation is done
- Quinn to pick up from here

Value: [0.6 to 2]
 2022-05-06 12:26:51 -04:00
NunoSempere
5dd272fb0c tweak: Add tests for combineAlongSupportOfSecondArgument 2022-05-06 11:45:11 -04:00
NunoSempere
cc3db79a2a feat: kl function but no dealing with errors yet 2022-05-06 10:49:04 -04:00
dependabot[bot]
875d6cbb2c
⬆️ Bump react-vega from 7.5.0 to 7.5.1 
Bumps [react-vega](https://github.com/vega/react-vega) from 7.5.0 to 7.5.1.
- [Release notes](https://github.com/vega/react-vega/releases)
- [Changelog](https://github.com/vega/react-vega/blob/master/CHANGELOG.md)
- [Commits](https://github.com/vega/react-vega/compare/v7.5.0...v7.5.1)

---
updated-dependencies:
- dependency-name: react-vega
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
 2022-05-06 14:37:03 +00:00
dependabot[bot]
da6fb8fe8d
⬆️ Bump @docusaurus/core from 2.0.0-beta.19 to 2.0.0-beta.20 
Bumps [@docusaurus/core](https://github.com/facebook/docusaurus/tree/HEAD/packages/docusaurus) from 2.0.0-beta.19 to 2.0.0-beta.20.
- [Release notes](https://github.com/facebook/docusaurus/releases)
- [Changelog](https://github.com/facebook/docusaurus/blob/main/CHANGELOG.md)
- [Commits](https://github.com/facebook/docusaurus/commits/v2.0.0-beta.20/packages/docusaurus)

---
updated-dependencies:
- dependency-name: "@docusaurus/core"
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
 2022-05-06 14:36:36 +00:00
NunoSempere
b393af8762 tweak: start building new function from scratch 2022-05-06 10:04:41 -04:00
NunoSempere
87d6f8d4f6 fix: change integrand check order in KL divergence code 2022-05-06 09:49:42 -04:00
Quinn Dougherty
fd17da83b8 Merge remote-tracking branch 'origin/develop' into log-score-attempt 2022-05-05 20:42:39 -04:00
Quinn Dougherty
38d1c7aa61 Cleanup with option<(float, float, float)> 
Value: [1e-5 to 1e-3]
 2022-05-05 20:42:05 -04:00
Quinn Dougherty
dcf56d7bc6 combineAlongSupportOfSecondArgument implemented, tests still failing 
Value: [1e-4 to 4e-2]
 2022-05-05 20:02:12 -04:00
Quinn Dougherty
b49865d3aa progress on klDivergence (still working) 
Value: [1e-5 to 1e-2]
 2022-05-05 15:37:28 -04:00
dependabot[bot]
a92e32b0ec
⬆️ Bump @docusaurus/preset-classic 
Bumps [@docusaurus/preset-classic](https://github.com/facebook/docusaurus/tree/HEAD/packages/docusaurus-preset-classic) from 2.0.0-beta.18 to 2.0.0-beta.19.
- [Release notes](https://github.com/facebook/docusaurus/releases)
- [Changelog](https://github.com/facebook/docusaurus/blob/main/CHANGELOG.md)
- [Commits](https://github.com/facebook/docusaurus/commits/v2.0.0-beta.19/packages/docusaurus-preset-classic)

---
updated-dependencies:
- dependency-name: "@docusaurus/preset-classic"
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
 2022-05-05 14:55:35 +00:00
Quinn
6664e65e6c
Merge pull request #490 from quantified-uncertainty/dependabot/npm_and_yarn/docusaurus/core-2.0.0-beta.19 
⬆️ Bump @docusaurus/core from 2.0.0-beta.18 to 2.0.0-beta.19
 2022-05-05 10:54:31 -04:00
dependabot[bot]
690467d0be
⬆️ Bump @docusaurus/core from 2.0.0-beta.18 to 2.0.0-beta.19 
Bumps [@docusaurus/core](https://github.com/facebook/docusaurus/tree/HEAD/packages/docusaurus) from 2.0.0-beta.18 to 2.0.0-beta.19.
- [Release notes](https://github.com/facebook/docusaurus/releases)
- [Changelog](https://github.com/facebook/docusaurus/blob/main/CHANGELOG.md)
- [Commits](https://github.com/facebook/docusaurus/commits/v2.0.0-beta.19/packages/docusaurus)

---
updated-dependencies:
- dependency-name: "@docusaurus/core"
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
 2022-05-05 14:46:10 +00:00
dependabot[bot]
24b2aefce7
⬆️ Bump webpack-dev-server from 4.8.1 to 4.9.0 
Bumps [webpack-dev-server](https://github.com/webpack/webpack-dev-server) from 4.8.1 to 4.9.0.
- [Release notes](https://github.com/webpack/webpack-dev-server/releases)
- [Changelog](https://github.com/webpack/webpack-dev-server/blob/master/CHANGELOG.md)
- [Commits](https://github.com/webpack/webpack-dev-server/compare/v4.8.1...v4.9.0)

---
updated-dependencies:
- dependency-name: webpack-dev-server
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
 2022-05-05 14:45:33 +00:00
Quinn Dougherty
32a881d06a Call Jstat for mean instead of calculate it 
Value: [1e-8 to 1e-4]
 2022-05-05 10:38:33 -04:00
Sam Nolan
72b7a7e274 squiggle-components 0.2.20 2022-05-04 22:59:58 +00:00
Ozzie Gooen
e866ff062c
Merge pull request #486 from quantified-uncertainty/no-types-arrays 
Always puts new elements on different lines.
 2022-05-04 18:51:47 -04:00
Sam Nolan
3898753b00 Change gradient of one color to solid color 2022-05-04 22:35:04 +00:00
Quinn Dougherty
dd942fe29e cleanup; CR 
Value: [1e-9 to 1e-5]
 2022-05-04 18:19:47 -04:00
Sam Nolan
a25c83edf8 Always puts new elements on different lines. 
Closes #480
 2022-05-04 21:55:22 +00:00
Umur Ozkul
99f54f596c ternary operator (tested) 2022-05-04 22:36:34 +02:00
Umur Ozkul
888b615445 Merge branch 'reducer-dev-F-ifthenelse' into ternary 
packages/squiggle-lang/src/rescript/Reducer/Reducer_Dispatch/Reducer_Dispatch_BuiltInMacros.res
packages/squiggle-lang/src/rescript/Reducer/Reducer_Expression/Reducer_Expression.res
packages/squiggle-lang/src/rescript/Reducer/Reducer_Expression/Reducer_Expression_Builder.res
packages/squiggle-lang/src/rescript/Reducer/Reducer_MathJs/Reducer_MathJs_ToExpression.res
 2022-05-04 21:51:15 +02:00
Umur Ozkul
8aa4248996 spelling 2022-05-04 21:23:40 +02:00
Quinn Dougherty
6211d3cfb0 Some sorta klDivergence conclusion 
Value: [1e-6 to 1e-3]
 2022-05-04 14:55:49 -04:00
Umur Ozkul
85b8333a09 Merge branch 'develop' into Umur-reducer-dev 2022-05-04 20:45:48 +02:00
Umur Ozkul
ad220ed2b4 foreign function interface 2022-05-04 20:44:46 +02:00
Quinn Dougherty
898547f3a3 klDivergence is now LogarithmWithThreshold 2022-05-04 13:53:32 -04:00
Quinn Dougherty
cfa83e552d Merge remote-tracking branch 'origin/develop' into log-score-attempt 2022-05-04 13:05:40 -04:00
Quinn Dougherty
c95c56cfb8 Added logScaleWithThreshold(eps) and completed renaming to 
`klDivergence`

Value: [1e-5 to 1e-3]
 2022-05-04 13:02:58 -04:00
Sam Nolan
801e4c23d1 v0.2.19 2022-05-04 16:50:08 +00:00
Ozzie Gooen
268f138dcf
Merge pull request #478 from quantified-uncertainty/reducer-dev 
Reducer dev: map, reduce, reduceReverse, keep
 2022-05-04 12:27:03 -04:00
Quinn Dougherty
236be470d5 Merge remote-tracking branch 'origin/develop' into log-score-attempt 2022-05-04 12:22:33 -04:00
Quinn Dougherty
3fcc82442d Completed renaming to KLDivergence 
Value: [1e-8 to 1e-4]
 2022-05-04 12:21:30 -04:00
Ozzie Gooen
7585bd3599
Merge pull request #479 from quantified-uncertainty/gamma-distribution 
Add Gamma distribution
 2022-05-04 12:01:28 -04:00
Quinn Dougherty
683439c7e5 Changed Ok(0) to Error(NegativeInfinityError). 
Value: [1e-7 to 1e-5]
 2022-05-04 11:59:46 -04:00