Merge remote-tracking branch 'origin/develop' into issue326
This commit is contained in:
commit
5469435dc5
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@ -2,8 +2,8 @@
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"name": "@quri/squiggle-components",
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"version": "0.2.9",
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"dependencies": {
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"antd": "^4.19.3",
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"react-ace": "10.0.0",
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"antd": "^4.20.1",
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"react-ace": "10.1.0",
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"react-dom": "^18.0.0",
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"@react-hook/size": "^2.1.2",
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"styled-components": "^5.3.5"
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|
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@ -65,7 +65,7 @@ describe("(Algebraic) addition of distributions", () => {
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| None => "algebraicAdd has"->expect->toBe("failed")
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// This is nondeterministic, we could be in a situation where ci fails but you click rerun and it passes, which is bad.
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// sometimes it works with ~digits=2.
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| Some(x) => x->expect->toBeSoCloseTo(0.01927225696028752, ~digits=1) // (uniformMean +. betaMean)
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| Some(x) => x->expect->toBeSoCloseTo(9.78655777150074, ~digits=1) // (uniformMean +. betaMean)
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}
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})
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test("beta(alpha=2, beta=5) + uniform(low=9, high=10)", () => {
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@ -82,7 +82,7 @@ describe("(Algebraic) addition of distributions", () => {
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| None => "algebraicAdd has"->expect->toBe("failed")
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// This is nondeterministic, we could be in a situation where ci fails but you click rerun and it passes, which is bad.
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// sometimes it works with ~digits=2.
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| Some(x) => x->expect->toBeSoCloseTo(0.019275414920485248, ~digits=1) // (uniformMean +. betaMean)
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| Some(x) => x->expect->toBeSoCloseTo(9.786753454457116, ~digits=1) // (uniformMean +. betaMean)
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}
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})
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})
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@ -162,8 +162,8 @@ describe("(Algebraic) addition of distributions", () => {
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switch received {
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| None => "algebraicAdd has"->expect->toBe("failed")
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// This is nondeterministic, we could be in a situation where ci fails but you click rerun and it passes, which is bad.
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// sometimes it works with ~digits=4.
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| Some(x) => x->expect->toBeSoCloseTo(0.001978994877226945, ~digits=3)
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// This value was calculated by a python script
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| Some(x) => x->expect->toBeSoCloseTo(0.979023, ~digits=0)
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}
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})
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test("(beta(alpha=2, beta=5) + uniform(low=9, high=10)).pdf(10)", () => {
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@ -176,9 +176,8 @@ describe("(Algebraic) addition of distributions", () => {
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->E.R.toExn("Expected float", _)
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switch received {
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| None => "algebraicAdd has"->expect->toBe("failed")
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// This is nondeterministic, we could be in a situation where ci fails but you click rerun and it passes, which is bad.
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// sometimes it works with ~digits=4.
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| Some(x) => x->expect->toBeSoCloseTo(0.001978994877226945, ~digits=3)
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// This is nondeterministic.
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| Some(x) => x->expect->toBeSoCloseTo(0.979023, ~digits=0)
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}
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})
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})
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@ -253,8 +252,8 @@ describe("(Algebraic) addition of distributions", () => {
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switch received {
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| None => "algebraicAdd has"->expect->toBe("failed")
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// This is nondeterministic, we could be in a situation where ci fails but you click rerun and it passes, which is bad.
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// sometimes it works with ~digits=4.
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| Some(x) => x->expect->toBeSoCloseTo(0.0013961779932477507, ~digits=3)
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// The value was calculated externally using a python script
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| Some(x) => x->expect->toBeSoCloseTo(0.71148, ~digits=1)
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}
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})
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test("(beta(alpha=2, beta=5) + uniform(low=9, high=10)).cdf(10)", () => {
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@ -268,8 +267,8 @@ describe("(Algebraic) addition of distributions", () => {
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switch received {
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| None => "algebraicAdd has"->expect->toBe("failed")
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// This is nondeterministic, we could be in a situation where ci fails but you click rerun and it passes, which is bad.
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// sometimes it works with ~digits=4.
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| Some(x) => x->expect->toBeSoCloseTo(0.001388898111625753, ~digits=3)
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// The value was calculated externally using a python script
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| Some(x) => x->expect->toBeSoCloseTo(0.71148, ~digits=1)
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}
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})
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})
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@ -346,7 +345,7 @@ describe("(Algebraic) addition of distributions", () => {
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| None => "algebraicAdd has"->expect->toBe("failed")
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// This is nondeterministic, we could be in a situation where ci fails but you click rerun and it passes, which is bad.
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// sometimes it works with ~digits=2.
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| Some(x) => x->expect->toBeSoCloseTo(10.927078217530806, ~digits=0)
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| Some(x) => x->expect->toBeSoCloseTo(9.179319623146968, ~digits=0)
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}
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})
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test("(beta(alpha=2, beta=5) + uniform(low=9, high=10)).inv(2e-2)", () => {
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@ -361,7 +360,7 @@ describe("(Algebraic) addition of distributions", () => {
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| None => "algebraicAdd has"->expect->toBe("failed")
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// This is nondeterministic, we could be in a situation where ci fails but you click rerun and it passes, which is bad.
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// sometimes it works with ~digits=2.
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| Some(x) => x->expect->toBeSoCloseTo(10.915396627014363, ~digits=0)
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| Some(x) => x->expect->toBeSoCloseTo(9.174267267465632, ~digits=0)
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}
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})
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})
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@ -0,0 +1,20 @@
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open Jest
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open Expect
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describe("Converting from a sample set distribution", () => {
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test("Should be normalized", () => {
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let outputXYShape = SampleSetDist_ToPointSet.Internals.KDE.normalSampling(
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[1., 2., 3., 3., 4., 5., 5., 5., 6., 8., 9., 9.],
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50,
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2,
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)
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let c: PointSetTypes.continuousShape = {
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xyShape: outputXYShape,
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interpolation: #Linear,
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integralSumCache: None,
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integralCache: None,
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}
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expect(Continuous.isNormalized(c))->toBe(true)
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})
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})
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@ -46,6 +46,8 @@ describe("Distribution", () => {
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//It's important that sampleCount is less than 9. If it's more, than that will create randomness
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//Also, note, the value should be created using makeSampleSetDist() later on.
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let env = { sampleCount: 8, xyPointLength: 100 };
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let dist1Samples = [3, 4, 5, 6, 6, 7, 10, 15, 30];
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let dist1SampleCount = dist1Samples.length;
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let dist = new Distribution(
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{ tag: "SampleSet", value: [3, 4, 5, 6, 6, 7, 10, 15, 30] },
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env
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);
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test("mean", () => {
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expect(dist.mean().value).toBeCloseTo(3.737);
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expect(dist.mean().value).toBeCloseTo(8.704375514292865);
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});
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test("pdf", () => {
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expect(dist.pdf(5.0).value).toBeCloseTo(0.0431);
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expect(dist.pdf(5.0).value).toBeCloseTo(0.052007455285386944, 1);
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});
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test("cdf", () => {
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expect(dist.cdf(5.0).value).toBeCloseTo(0.155);
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expect(dist.cdf(5.0).value).toBeCloseTo(
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dist1Samples.filter((x) => x <= 5).length / dist1SampleCount
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);
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});
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test("inv", () => {
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expect(dist.inv(0.5).value).toBeCloseTo(9.458);
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expect(dist.inv(0.5).value).toBeCloseTo(6);
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});
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test("toPointSet", () => {
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expect(
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resultMap(dist.pointwiseAdd(dist2), (r: Distribution) =>
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r.toSparkline(20)
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).value
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).toEqual(Ok("▁▂▅██▅▅▅▆▇█▆▅▃▃▂▂▁▁▁"));
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).toEqual(Ok("▁▂▅██▅▅▅▆▆▇▅▄▃▃▂▂▁▁▁"));
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});
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});
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@ -46,7 +46,9 @@ describe("cumulative density function", () => {
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);
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});
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test("at the highest number in the sample is close to 1", () => {
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// This may not be true due to KDE estimating there to be mass above the
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// highest value. These tests fail
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test.skip("at the highest number in the sample is close to 1", () => {
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fc.assert(
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fc.property(arrayGen(), (xs_) => {
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let xs = Array.from(xs_);
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@ -43,7 +43,7 @@
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"@types/jest": "^27.4.0",
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"babel-plugin-transform-es2015-modules-commonjs": "^6.26.2",
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"codecov": "3.8.3",
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"fast-check": "2.24.0",
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"fast-check": "2.25.0",
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"gentype": "^4.3.0",
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"jest": "^27.5.1",
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"moduleserve": "0.9.1",
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@ -269,6 +269,11 @@ module T = Dist({
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XYShape.Analysis.getVarianceDangerously(t, mean, Analysis.getMeanOfSquares)
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})
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let isNormalized = (t: t): bool => {
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let areaUnderIntegral = t |> updateIntegralCache(Some(T.integral(t))) |> T.integralEndY
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areaUnderIntegral < 1. +. 1e-7 && areaUnderIntegral > 1. -. 1e-7
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}
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let downsampleEquallyOverX = (length, t): t =>
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t |> shapeMap(XYShape.XsConversion.proportionEquallyOverX(length))
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@ -15,8 +15,18 @@ const samplesToContinuousPdf = (
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if (_.isFinite(max)) {
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_samples = _.filter(_samples, (r) => r < max);
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}
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// The pdf that's created from this function is not a pdf but a pmf. y values
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// being probability mass and not density.
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// This is awkward, because our code assumes later that y is a density
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let pdf = pdfast.create(_samples, { size, width });
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return { xs: pdf.map((r) => r.x), ys: pdf.map((r) => r.y) };
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// To convert this to a density, we need to find the step size. This is kept
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// constant for all y values
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let stepSize = pdf[1].x - pdf[0].x;
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// We then adjust the y values to density
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return { xs: pdf.map((r) => r.x), ys: pdf.map((r) => r.y / stepSize) };
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};
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module.exports = {
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|
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@ -90,7 +90,7 @@ let dispatchMacroCall = (
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Js.Dict.set(acc, key, value)
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acc
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})
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externalBindings->EvRecord->ExpressionT.EValue->Ok
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externalBindings->ExpressionValue.EvRecord->ExpressionT.EValue->Ok
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}
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let doBindExpression = (expression: expression, bindings: ExpressionT.bindings) =>
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|
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30
yarn.lock
30
yarn.lock
|
@ -4089,9 +4089,9 @@
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"@types/react" "*"
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"@types/react@*", "@types/react@^16.9.19", "@types/react@^18.0.1", "@types/react@^18.0.3":
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version "18.0.6"
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resolved "https://registry.yarnpkg.com/@types/react/-/react-18.0.6.tgz#30206c3830af6ce8639b91ace5868bc2d3d1d96c"
|
||||
integrity sha512-bPqwzJRzKtfI0mVYr5R+1o9BOE8UEXefwc1LwcBtfnaAn6OoqMhLa/91VA8aeWfDPJt1kHvYKI8RHcQybZLHHA==
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version "18.0.7"
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resolved "https://registry.yarnpkg.com/@types/react/-/react-18.0.7.tgz#8437a226763adf854969954dfe582529a406cbad"
|
||||
integrity sha512-CXSXHzTexlX9esf4ReIUJeaemKcmBEvYzxHDUk19c3BCcEGUvUjkeC3jkscPSfSaQ6SPDRNd/zMxi8oc/P1zxA==
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dependencies:
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"@types/prop-types" "*"
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"@types/scheduler" "*"
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|
@ -4899,10 +4899,10 @@ ansi-to-html@^0.6.11:
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dependencies:
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entities "^2.0.0"
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antd@^4.19.3:
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version "4.20.0"
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resolved "https://registry.yarnpkg.com/antd/-/antd-4.20.0.tgz#5f5fa4fccb90dd3e091c8d6e9d503114d98d862f"
|
||||
integrity sha512-Msowfvabsn/yJIo3qYU0vMqGb31OUylMeFRDilosBViG2AS8R2VB2IX53kbw4kFV3vr7fr2HXcuQkf/FMLU+Dg==
|
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antd@^4.20.1:
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version "4.20.1"
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resolved "https://registry.yarnpkg.com/antd/-/antd-4.20.1.tgz#6cd5a406c7172d61a5d0693ea52ee908650cf674"
|
||||
integrity sha512-asKxOV0a6AijqonbcXkO08/q+XvqS/HmGfaRIS6ZH1ALR3FS2q+kTW52rJZO9rfoOb/ldPhEBVSWiNrbiB+uCQ==
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dependencies:
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"@ant-design/colors" "^6.0.0"
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"@ant-design/icons" "^4.7.0"
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|
@ -8472,10 +8472,10 @@ extglob@^2.0.4:
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snapdragon "^0.8.1"
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to-regex "^3.0.1"
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fast-check@2.24.0:
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version "2.24.0"
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resolved "https://registry.yarnpkg.com/fast-check/-/fast-check-2.24.0.tgz#39f85586862108a4de6394c5196ebcf8b76b6c8b"
|
||||
integrity sha512-iNXbN90lbabaCUfnW5jyXYPwMJLFYl09eJDkXA9ZoidFlBK63gNRvcKxv+8D1OJ1kIYjwBef4bO/K3qesUeWLQ==
|
||||
fast-check@2.25.0:
|
||||
version "2.25.0"
|
||||
resolved "https://registry.yarnpkg.com/fast-check/-/fast-check-2.25.0.tgz#5146601851bf3be0953bd17eb2b7d547936c6561"
|
||||
integrity sha512-wRUT2KD2lAmT75WNIJIHECawoUUMHM0I5jrlLXGtGeqmPL8jl/EldUDjY1VCp6fDY8yflyfUeIOsOBrIbIiArg==
|
||||
dependencies:
|
||||
pure-rand "^5.0.1"
|
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|
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|
@ -14235,10 +14235,10 @@ rc@^1.2.8:
|
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minimist "^1.2.0"
|
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strip-json-comments "~2.0.1"
|
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|
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react-ace@10.0.0:
|
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version "10.0.0"
|
||||
resolved "https://registry.yarnpkg.com/react-ace/-/react-ace-10.0.0.tgz#1760e302604cff35ba40963db43eb027513b6572"
|
||||
integrity sha512-AUoA2OsKOCv8fXLqcFM232dF/Z8w14bwPUZ9z5I2zjBfqfZOZLqxnhXN+qKL6VrQXs1DLUvalGOuM5TABAFOCA==
|
||||
react-ace@10.1.0:
|
||||
version "10.1.0"
|
||||
resolved "https://registry.yarnpkg.com/react-ace/-/react-ace-10.1.0.tgz#d348eac2b16475231779070b6cd16768deed565f"
|
||||
integrity sha512-VkvUjZNhdYTuKOKQpMIZi7uzZZVgzCjM7cLYu6F64V0mejY8a2XTyPUIMszC6A4trbeMIHbK5fYFcT/wkP/8VA==
|
||||
dependencies:
|
||||
ace-builds "^1.4.14"
|
||||
diff-match-patch "^1.0.5"
|
||||
|
|
Loading…
Reference in New Issue
Block a user