Merge pull request #37 from QURIresearch/faster-upsert

Faster upsert
2022-03-30 21:56:00 -04:00 · 2022-03-30 21:56:00 -04:00 · 8060303936
commit 8060303936
parent 9fc8a7de2a 111aa8c9af
6 changed files with 229 additions and 155 deletions
--- a/package-lock.json
+++ b/package-lock.json
@ -64,6 +64,7 @@
      "devDependencies": {
        "@netlify/plugin-nextjs": "^4.2.4",
        "@svgr/cli": "^6.2.1",
+        "@types/pg": "^8.6.5",
        "netlify-cli": "^9.13.6"
      }
    },
@ -1691,6 +1692,17 @@
      "integrity": "sha512-//oorEZjL6sbPcKUaCdIGlIUeH26mgzimjBB77G6XRgnDl/L5wOnpyBGRe/Mmf5CVW3PwEBE1NjiMZ/ssFh4wA==",
      "license": "MIT"
    },
+    "node_modules/@types/pg": {
+      "version": "8.6.5",
+      "resolved": "https://registry.npmjs.org/@types/pg/-/pg-8.6.5.tgz",
+      "integrity": "sha512-tOkGtAqRVkHa/PVZicq67zuujI4Oorfglsr2IbKofDwBSysnaqSx7W1mDqFqdkGE6Fbgh+PZAl0r/BWON/mozw==",
+      "dev": true,
+      "dependencies": {
+        "@types/node": "*",
+        "pg-protocol": "*",
+        "pg-types": "^2.2.0"
+      }
+    },
    "node_modules/@types/prop-types": {
      "version": "15.7.4",
      "resolved": "https://registry.npmjs.org/@types%2fprop-types/-/prop-types-15.7.4.tgz",
@ -36019,6 +36031,17 @@
      "resolved": "https://registry.npmjs.org/@types%2fparse-json/-/parse-json-4.0.0.tgz",
      "integrity": "sha512-//oorEZjL6sbPcKUaCdIGlIUeH26mgzimjBB77G6XRgnDl/L5wOnpyBGRe/Mmf5CVW3PwEBE1NjiMZ/ssFh4wA=="
    },
+    "@types/pg": {
+      "version": "8.6.5",
+      "resolved": "https://registry.npmjs.org/@types/pg/-/pg-8.6.5.tgz",
+      "integrity": "sha512-tOkGtAqRVkHa/PVZicq67zuujI4Oorfglsr2IbKofDwBSysnaqSx7W1mDqFqdkGE6Fbgh+PZAl0r/BWON/mozw==",
+      "dev": true,
+      "requires": {
+        "@types/node": "*",
+        "pg-protocol": "*",
+        "pg-types": "^2.2.0"
+      }
+    },
    "@types/prop-types": {
      "version": "15.7.4",
      "resolved": "https://registry.npmjs.org/@types%2fprop-types/-/prop-types-15.7.4.tgz",
--- a/package.json
+++ b/package.json
@ -82,6 +82,7 @@
  "devDependencies": {
    "@netlify/plugin-nextjs": "^4.2.4",
    "@svgr/cli": "^6.2.1",
-    "netlify-cli": "^9.13.6"
+    "netlify-cli": "^9.13.6",
+    "@types/pg": "^8.6.5"
  }
 }
--- a/src/backend/database/pg-wrapper.ts
+++ b/src/backend/database/pg-wrapper.ts
@ -1,11 +1,10 @@
-import pkg from "pg";
+import { Pool, PoolClient } from "pg";

-import { platforms } from "../platforms";
+import { Forecast, platforms } from "../platforms";
 import { hash } from "../utils/hash";
+import { measureTime } from "../utils/measureTime";
 import { roughSizeOfObject } from "../utils/roughSize";

-const { Pool } = pkg;
-
 // Definitions
 const schemas = ["latest", "history"];
 const year = Number(new Date().toISOString().slice(0, 4));
@ -26,10 +25,6 @@ const tableNamesWhiteListHistory = [
  ...allowed_years,
  ...allowed_year_month_histories,
 ];
-const tableNamesWhitelist = [
-  ...tableNamesWhitelistLatest,
-  ...tableNamesWhiteListHistory,
-];
 const createFullName = (schemaName, namesArray) =>
  namesArray.map((name) => `${schemaName}.${name}`);
 const tableWhiteList = [
@ -63,28 +58,33 @@ const readOnlyPool = new Pool({
 });

 // Helpers
-export const runPgCommand = async ({ command, pool }) => {
+export const runPgCommand = async ({
+  command,
+  pool,
+}: {
+  command: string;
+  pool: Pool;
+}) => {
  console.log(command);
  const client = await pool.connect();
  let result;
  try {
    let response = await client.query(command);
-    // console.log(response);
    result = { results: response ? response.rows : null };
  } catch (error) {
    console.log(error);
  } finally {
    client.release();
  }
-  // console.log(results)
  return result;
 };

 // Initialize
-let dropTable = (schema, table) => `DROP TABLE IF EXISTS ${schema}.${table}`;
-let createIndex = (schema, table) =>
+let dropTable = (schema: string, table: string) =>
+  `DROP TABLE IF EXISTS ${schema}.${table}`;
+let createIndex = (schema: string, table: string) =>
  `CREATE INDEX ${schema}_${table}_id_index ON ${schema}.${table} (id);`;
-let createUniqueIndex = (schema, table) =>
+let createUniqueIndex = (schema: string, table: string) =>
  `CREATE UNIQUE INDEX ${schema}_${table}_id_index ON ${schema}.${table} (id);`;

 async function pgInitializeScaffolding() {
@ -97,7 +97,7 @@ async function pgInitializeScaffolding() {
      await runPgCommand({ command, pool: readWritePool });
    }

-    let buildGrantSelectForSchema = (schema) =>
+    let buildGrantSelectForSchema = (schema: string) =>
      `GRANT SELECT ON ALL TABLES IN SCHEMA ${schema} TO public_read_only_user`;
    for (let schema of schemas) {
      await runPgCommand({
@ -106,7 +106,7 @@ async function pgInitializeScaffolding() {
      });
    }

-    let alterDefaultPrivilegesForSchema = (schema) =>
+    let alterDefaultPrivilegesForSchema = (schema: string) =>
      `ALTER DEFAULT PRIVILEGES IN SCHEMA ${schema} GRANT SELECT ON TABLES TO public_read_only_user`;
    for (let schema of schemas) {
      await runPgCommand({
@ -144,8 +144,8 @@ async function pgInitializeScaffolding() {
 }

 let buildMetaforecastTable = (
-  schema,
-  table
+  schema: string,
+  table: string
 ) => `CREATE TABLE ${schema}.${table} (
    id text, 
    title text, 
@ -245,7 +245,10 @@ async function pgInitializeDashboards() {
  }
 }

-let buildHistoryTable = (schema, table) => `CREATE TABLE ${schema}.${table} (
+let buildHistoryTable = (
+  schema: string,
+  table: string
+) => `CREATE TABLE ${schema}.${table} (
    id text, 
    title text, 
    url text, 
@ -338,7 +341,15 @@ export async function pgInitialize() {
 }

 // Read
-async function pgReadWithPool({ schema, tableName, pool }) {
+async function pgReadWithPool({
+  schema,
+  tableName,
+  pool,
+}: {
+  schema: string;
+  tableName: string;
+  pool: Pool;
+}) {
  if (tableWhiteList.includes(`${schema}.${tableName}`)) {
    let command = `SELECT * from ${schema}.${tableName}`;
    let response = await runPgCommand({ command, pool });
@ -351,11 +362,23 @@ async function pgReadWithPool({ schema, tableName, pool }) {
  }
 }

-export async function pgRead({ schema, tableName }) {
+export async function pgRead({
+  schema,
+  tableName,
+}: {
+  schema: string;
+  tableName: string;
+}) {
  return await pgReadWithPool({ schema, tableName, pool: readWritePool });
 }

-export async function pgReadWithReadCredentials({ schema, tableName }) {
+export async function pgReadWithReadCredentials({
+  schema,
+  tableName,
+}: {
+  schema: string;
+  tableName: string;
+}) {
  // currently does not work.
  /* return await pgReadWithPool({
    schema,
@ -366,8 +389,16 @@ export async function pgReadWithReadCredentials({ schema, tableName }) {
  return await pgReadWithPool({ schema, tableName, pool: readWritePool });
 }

-export async function pgGetByIds({ ids, schema, table }) {
-  let idstring = `( ${ids.map((id) => `'${id}'`).join(", ")} )`; // (1, 2, 3)
+export async function pgGetByIds({
+  ids,
+  schema,
+  table,
+}: {
+  ids: string[];
+  schema: string;
+  table: string;
+}) {
+  let idstring = `( ${ids.map((id: string) => `'${id}'`).join(", ")} )`; // (1, 2, 3)
  let command = `SELECT * from ${schema}.${table} where id in ${idstring}`;
  // see: https://stackoverflow.com/questions/5803472/sql-where-id-in-id1-id2-idn
  let response = await runPgCommand({ command, pool: readWritePool });
@ -376,73 +407,77 @@ export async function pgGetByIds({ ids, schema, table }) {
  return results;
 }

-export async function pgInsert({ datum, schema, tableName }) {
-  if (tableWhiteList.includes(`${schema}.${tableName}`)) {
-    let text = `INSERT INTO ${schema}.${tableName} VALUES($1, $2, $3, $4, $5, $6, $7, $8, $9, $10)`;
-    let timestamp =
-      datum.timestamp &&
-      !!datum.timestamp.slice &&
-      !isNaN(Date.parse(datum.timestamp))
-        ? datum.timestamp
-        : new Date().toISOString();
-    timestamp = timestamp.slice(0, 19).replace("T", " ");
-    let values = [
-      datum.id,
-      datum.title,
-      datum.url,
-      datum.platform,
-      datum.description || "",
-      JSON.stringify(datum.options || []),
-      timestamp, // fix
-      datum.stars ||
-        (datum.qualityindicators ? datum.qualityindicators.stars : 2),
-      JSON.stringify(datum.qualityindicators || []),
-      JSON.stringify(datum.extra || []),
-    ];
-    const client = await readWritePool.connect();
-    let result;
-    try {
-      result = await client.query(text, values);
-    } catch (error) {
-      console.log(error);
-    } finally {
-      client.release();
-    }
-    // console.log(result)
-    return result;
-  } else {
+export async function pgBulkInsert({
+  data,
+  schema,
+  tableName,
+  client,
+}: {
+  data: Forecast[];
+  schema: string;
+  tableName: string;
+  client: PoolClient;
+}) {
+  if (!tableWhiteList.includes(`${schema}.${tableName}`)) {
    throw Error(
      `Table ${schema}.${tableName} not in whitelist; stopping to avoid tricky sql injections`
    );
  }
+
+  const generateQuery = (rows: number) => {
+    let text = `INSERT INTO ${schema}.${tableName} VALUES`;
+    const cols = 10;
+    const parts: string[] = [];
+    for (let r = 0; r < rows; r++) {
+      const bits = [];
+      for (let c = 1; c <= cols; c++) {
+        bits.push(`$${cols * r + c}`);
+      }
+      parts.push("(" + bits.join(", ") + ")");
+    }
+
+    text += parts.join(", ");
+    return text;
+  };
+
+  let from = 0;
+  const chunkSize = 20;
+  while (from < data.length - 1) {
+    const take = Math.min(chunkSize, data.length - from);
+    const query = generateQuery(take);
+
+    const chunk = [];
+    for (let i = from; i < from + take; i++) {
+      const datum = data[i];
+      let timestamp =
+        datum.timestamp &&
+        !!datum.timestamp.slice &&
+        !isNaN(Date.parse(datum.timestamp))
+          ? datum.timestamp
+          : new Date().toISOString();
+      timestamp = timestamp.slice(0, 19).replace("T", " ");
+      const values = [
+        datum.id,
+        datum.title,
+        datum.url,
+        datum.platform,
+        datum.description || "",
+        JSON.stringify(datum.options || []),
+        timestamp, // fix
+        datum.stars ||
+          (datum.qualityindicators ? datum.qualityindicators.stars : 2),
+        JSON.stringify(datum.qualityindicators || []),
+        JSON.stringify(datum.extra || []),
+      ];
+      chunk.push(...values);
+    }
+
+    console.log(`Inserting ${from + 1}..${from + take}`);
+    from += take;
+    await client.query(query, chunk);
+  }
 }
-/* For reference:
-pgInsert({
-		"id": "fantasyscotus-580",
-		"title": "In Wooden v. U.S., the SCOTUS will affirm the lower court's decision",
-		"url": "https://fantasyscotus.net/user-predictions/case/wooden-v-us/",
-		"platform": "FantasySCOTUS",
-		"description": "62.50% (75 out of 120) of FantasySCOTUS players predict that the lower court's decision will be affirmed. FantasySCOTUS overall predicts an outcome of Affirm 6-3. Historically, FantasySCOTUS has chosen the correct side 50.00% of the time.",
-		"options": [
-			{
-				"name": "Yes",
-				"probability": 0.625,
-				"type": "PROBABILITY"
-			},
-			{
-				"name": "No",
-				"probability": 0.375,
-				"type": "PROBABILITY"
-			}
-		],
-		"timestamp": "2022-02-11T21:42:19.291Z",
-		"qualityindicators": {
-			"numforecasts": 120,
-			"stars": 2
-		}
-	}
-)
-*/
+
 export async function pgInsertIntoDashboard({ datum, schema, tableName }) {
  if (tableWhiteList.includes(`${schema}.${tableName}`)) {
    let text = `INSERT INTO ${schema}.${tableName} VALUES($1, $2, $3, $4, $5, $6, $7)`;
@ -502,75 +537,49 @@ pgInsertIntoDashboard({
 });
 */
 export async function pgUpsert({ contents, schema, tableName }) {
-  if (tableWhiteList.includes(`${schema}.${tableName}`)) {
-    let init = Date.now();
-    if (schema == "latest") {
-      await runPgCommand({
-        command: dropTable(schema, tableName),
-        pool: readWritePool,
-      });
-      await runPgCommand({
-        command: buildMetaforecastTable(schema, tableName),
-        pool: readWritePool,
-      });
-      await runPgCommand({
-        command: createUniqueIndex(schema, tableName),
-        pool: readWritePool,
-      });
-    }
-    console.log(
-      `Upserting ${contents.length} rows into postgres table ${schema}.${tableName}.`
-    );
-    console.log(
-      `Expected to take ${Number((contents.length * 831.183) / 4422).toFixed(
-        2
-      )} seconds or ${Number((contents.length * 13.85305) / 4422).toFixed(
-        2
-      )} minutes`
-    );
-    let i = 0;
-    for (let datum of contents) {
-      await pgInsert({ datum, schema, tableName });
-      if (i < 10) {
-        console.log(`Inserted ${datum.id}`);
-        i++;
-      } else if (i == 10) {
-        console.log("...");
-        i++;
-      }
-    }
-    console.log(
-      `Inserted ${
-        contents.length
-      } rows with approximate cummulative size ${roughSizeOfObject(
-        contents
-      )} MB into ${schema}.${tableName}.`
-    );
-    let check = await pgRead({ schema, tableName });
-    console.log(
-      `Received ${
-        check.length
-      } rows with approximate cummulative size ${roughSizeOfObject(
-        check
-      )} MB from ${schema}.${tableName}.`
-    );
-    console.log("Sample: ");
-    console.log(JSON.stringify(check.slice(0, 1), null, 4));
-
-    let end = Date.now();
-    let difference = end - init;
-    console.log(
-      `Took ${difference / 1000} seconds, or ${
-        difference / (1000 * 60)
-      } minutes.`
-    );
-
-    //console.log(JSON.stringify(check.slice(0, 1), null, 4));
-  } else {
+  if (!tableWhiteList.includes(`${schema}.${tableName}`)) {
    console.log("tableWhiteList:");
    console.log(tableWhiteList);
    throw Error(
      `Table ${schema}.${tableName} not in whitelist; stopping to avoid tricky sql injections`
    );
  }
+
+  await measureTime(async () => {
+    const client = await readWritePool.connect();
+    try {
+      await client.query("BEGIN");
+      if (schema === "latest") {
+        client.query(`DELETE FROM latest.${tableName}`);
+      }
+      console.log(
+        `Upserting ${contents.length} rows into postgres table ${schema}.${tableName}.`
+      );
+      console.log(
+        `Expected to take ${Number((contents.length * 831.183) / 4422).toFixed(
+          2
+        )} seconds or ${Number((contents.length * 13.85305) / 4422).toFixed(
+          2
+        )} minutes`
+      );
+
+      await pgBulkInsert({ data: contents, schema, tableName, client });
+      console.log(
+        `Inserted ${
+          contents.length
+        } rows with approximate cummulative size ${roughSizeOfObject(
+          contents
+        )} MB into ${schema}.${tableName}.`
+      );
+
+      console.log("Sample: ");
+      console.log(JSON.stringify(contents.slice(0, 1), null, 4));
+      await client.query("COMMIT");
+    } catch (e) {
+      await client.query("ROLLBACK");
+      throw e;
+    } finally {
+      client.release();
+    }
+  });
 }
--- a/src/backend/platforms/index.ts
+++ b/src/backend/platforms/index.ts
@ -18,13 +18,48 @@ import { xrisk } from "./xrisk";

 export interface Forecast {
  id: string;
+  // "fantasyscotus-580"
+
  title: string;
+  // "In Wooden v. U.S., the SCOTUS will affirm the lower court's decision"
+
  url: string;
+  // "https://fantasyscotus.net/user-predictions/case/wooden-v-us/"
+
  description: string;
+  // "62.50% (75 out of 120) of FantasySCOTUS players predict that the lower court's decision will be affirmed. FantasySCOTUS overall predicts an outcome of Affirm 6-3. Historically, FantasySCOTUS has chosen the correct side 50.00% of the time."
  platform: string;
+  // "FantasySCOTUS"
+
  options: any[];
+  /*
+  [
+    {
+      "name": "Yes",
+      "probability": 0.625,
+      "type": "PROBABILITY"
+    },
+    {
+      "name": "No",
+      "probability": 0.375,
+      "type": "PROBABILITY"
+    }
+  ]
+  */
+
  timestamp: string;
+  // "2022-02-11T21:42:19.291Z"
+
+  stars?: number;
+  // 2
+
  qualityindicators: any;
+  /*
+  {
+    "numforecasts": 120,
+    "stars": 2
+  }
+  */
  extra?: any;
 }

--- a/src/backend/utils/algolia.ts
+++ b/src/backend/utils/algolia.ts
@ -6,7 +6,6 @@ import { mergeEverythingInner } from "../flow/mergeEverything";
 let cookie = process.env.ALGOLIA_MASTER_API_KEY;
 const algoliaAppId = process.env.NEXT_PUBLIC_ALGOLIA_APP_ID;
 const client = algoliasearch(algoliaAppId, cookie);
-console.log(`Initializing algolia index for ${algoliaAppId}`);
 const index = client.initIndex("metaforecast");

 export async function rebuildAlgoliaDatabaseTheHardWay() {
@ -54,8 +53,6 @@ export async function rebuildAlgoliaDatabaseTheEasyWay() {
  }));
  // this is necessary to filter by missing attributes https://www.algolia.com/doc/guides/managing-results/refine-results/filtering/how-to/filter-by-null-or-missing-attributes/

-  console.log(index.appId, index.indexName);
-
  if (index.exists()) {
    console.log("Index exists");
    await index.replaceAllObjects(records, { safe: true });
--- a/src/backend/utils/measureTime.ts
+++ b/src/backend/utils/measureTime.ts
@ -0,0 +1,9 @@
+export const measureTime = async (f: () => Promise<void>) => {
+  const init = Date.now();
+  await f();
+  const end = Date.now();
+  const difference = end - init;
+  console.log(
+    `Took ${difference / 1000} seconds, or ${difference / (1000 * 60)} minutes.`
+  );
+};