forked from personal/squiggle.c
Initial folder refactor
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e6b4cb89df
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BIN
CUDA/examples/core/00_example_template/example
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CUDA/examples/core/00_example_template/example
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CUDA/examples/core/00_example_template/example.c
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CUDA/examples/core/00_example_template/example.c
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#include "../../../squiggle.h"
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#include <stdio.h>
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#include <stdlib.h>
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int main()
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{
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// set randomness seed
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uint64_t* seed = malloc(sizeof(uint64_t));
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*seed = 1000; // xorshift can't start with 0
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// ...
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free(seed);
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}
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CUDA/examples/core/01_one_sample/example
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CUDA/examples/core/01_one_sample/example
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CUDA/examples/core/01_one_sample/example.c
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CUDA/examples/core/01_one_sample/example.c
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#include "../../../squiggle.h"
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#include <stdio.h>
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#include <stdlib.h>
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// Estimate functions
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double sample_0(uint64_t* seed) { UNUSED(seed); return 0; }
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double sample_1(uint64_t* seed) { UNUSED(seed); return 1; }
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double sample_few(uint64_t* seed) { return sample_to(1, 3, seed); }
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double sample_many(uint64_t* seed) { return sample_to(2, 10, seed); }
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double sample_model(uint64_t* seed){
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double p_a = 0.8;
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double p_b = 0.5;
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double p_c = p_a * p_b;
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int n_dists = 4;
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double weights[] = { 1 - p_c, p_c / 2, p_c / 4, p_c / 4 };
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double (*samplers[])(uint64_t*) = { sample_0, sample_1, sample_few, sample_many };
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double result = sample_mixture(samplers, weights, n_dists, seed);
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return result;
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}
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int main()
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{
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// set randomness seed
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uint64_t* seed = malloc(sizeof(uint64_t));
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*seed = 1000; // xorshift can't start with 0
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printf("result_one: %f\n", sample_model(seed));
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free(seed);
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}
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CUDA/examples/core/02_time_to_botec/example
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CUDA/examples/core/02_time_to_botec/example
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CUDA/examples/core/02_time_to_botec/example.c
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CUDA/examples/core/02_time_to_botec/example.c
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#include "../../../squiggle.h"
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#include <stdio.h>
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#include <stdlib.h>
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double sample_0(uint64_t* seed) { UNUSED(seed); return 0; }
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double sample_1(uint64_t* seed) { UNUSED(seed); return 1; }
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double sample_few(uint64_t* seed) { return sample_to(1, 3, seed); }
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double sample_many(uint64_t* seed) { return sample_to(2, 10, seed); }
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double sample_model(uint64_t* seed){
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double p_a = 0.8;
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double p_b = 0.5;
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double p_c = p_a * p_b;
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int n_dists = 4;
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double weights[] = { 1 - p_c, p_c / 2, p_c / 4, p_c / 4 };
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double (*samplers[])(uint64_t*) = { sample_0, sample_1, sample_few, sample_many };
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double result = sample_mixture(samplers, weights, n_dists, seed);
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return result;
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}
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int main()
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{
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// set randomness seed
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uint64_t* seed = malloc(sizeof(uint64_t));
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*seed = 1000; // xorshift can't start with 0
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int n_samples = 1000000;
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double* result_many = (double*)malloc((size_t)n_samples * sizeof(double));
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for (int i = 0; i < n_samples; i++) {
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result_many[i] = sample_model(seed);
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}
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printf("Mean: %f\n", array_mean(result_many, n_samples));
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free(seed);
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}
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CUDA/examples/core/03_gcc_nested_function/example
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CUDA/examples/core/03_gcc_nested_function/example
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CUDA/examples/core/03_gcc_nested_function/example.c
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CUDA/examples/core/03_gcc_nested_function/example.c
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#include "../../../squiggle.h"
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#include <stdio.h>
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#include <stdlib.h>
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double sample_model(uint64_t* seed){
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double sample_0(uint64_t* seed) { UNUSED(seed); return 0; }
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// Using a gcc extension, you can define a function inside another function
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double sample_1(uint64_t* seed) { UNUSED(seed); return 1; }
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double sample_few(uint64_t* seed) { return sample_to(1, 3, seed); }
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double sample_many(uint64_t* seed) { return sample_to(2, 10, seed); }
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double p_a = 0.8;
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double p_b = 0.5;
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double p_c = p_a * p_b;
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int n_dists = 4;
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double weights[] = { 1 - p_c, p_c / 2, p_c / 4, p_c / 4 };
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double (*samplers[])(uint64_t*) = { sample_0, sample_1, sample_few, sample_many };
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double result = sample_mixture(samplers, weights, n_dists, seed);
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return result;
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}
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int main()
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{
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// set randomness seed
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uint64_t* seed = malloc(sizeof(uint64_t));
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*seed = 1000; // xorshift can't start with 0
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int n_samples = 1000000;
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double* result_many = (double*)malloc((size_t)n_samples * sizeof(double));
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for (int i = 0; i < n_samples; i++) {
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result_many[i] = sample_model(seed);
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}
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printf("result_many: [");
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for (int i = 0; i < 100; i++) {
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printf("%.2f, ", result_many[i]);
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}
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printf("]\n");
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free(seed);
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}
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CUDA/examples/core/04_gamma_beta/example
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CUDA/examples/core/04_gamma_beta/example
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CUDA/examples/core/04_gamma_beta/example.c
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CUDA/examples/core/04_gamma_beta/example.c
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#include "../../../squiggle.h"
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#include <stdio.h>
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#include <stdlib.h>
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int main()
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{
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// set randomness seed
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uint64_t* seed = malloc(sizeof(uint64_t));
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*seed = 1000; // xorshift can't start with 0
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int n = 1000 * 1000;
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double* gamma_array = malloc(sizeof(double) * (size_t)n);
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for (int i = 0; i < n; i++) {
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gamma_array[i] = sample_gamma(1.0, seed);
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}
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printf("gamma(1) summary statistics = mean: %f, std: %f\n", array_mean(gamma_array, n), array_std(gamma_array, n));
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printf("\n");
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double* beta_array = malloc(sizeof(double) * (size_t)n);
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for (int i = 0; i < n; i++) {
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beta_array[i] = sample_beta(1, 2.0, seed);
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}
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printf("beta(1,2) summary statistics: mean: %f, std: %f\n", array_mean(beta_array, n), array_std(beta_array, n));
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printf("\n");
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free(gamma_array);
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free(beta_array);
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free(seed);
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}
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CUDA/examples/core/05_hundred_lognormals/example
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CUDA/examples/core/05_hundred_lognormals/example
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CUDA/examples/core/05_hundred_lognormals/example.c
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CUDA/examples/core/05_hundred_lognormals/example.c
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#include "../../../squiggle.h"
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#include <stdio.h>
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#include <stdlib.h>
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// Estimate functions
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int main()
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{
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// set randomness seed
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uint64_t* seed = malloc(sizeof(uint64_t));
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*seed = 1000; // xorshift can't start with 0
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for (int i = 0; i < 100; i++) {
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double sample = sample_lognormal(0, 10, seed);
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printf("%f\n", sample);
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}
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free(seed);
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}
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CUDA/examples/core/05_hundred_lognormals/run-sorted.sh
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CUDA/examples/core/05_hundred_lognormals/run-sorted.sh
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./example | sort -h
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CUDA/examples/core/06_dissolving_fermi_paradox/example
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CUDA/examples/core/06_dissolving_fermi_paradox/example
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CUDA/examples/core/06_dissolving_fermi_paradox/example.c
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CUDA/examples/core/06_dissolving_fermi_paradox/example.c
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#include "../../../squiggle.h"
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#include <math.h>
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#include <stdint.h>
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#include <stdio.h>
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#include <stdlib.h>
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double sample_fermi_logspace(uint64_t * seed)
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{
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// Replicate <https://arxiv.org/pdf/1806.02404.pdf>, and in particular the red line in page 11.
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// You can see a simple version of this function in naive.c in this same folder
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double log_rate_of_star_formation = sample_uniform(log(1), log(100), seed);
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double log_fraction_of_stars_with_planets = sample_uniform(log(0.1), log(1), seed);
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double log_number_of_habitable_planets_per_star_system = sample_uniform(log(0.1), log(1), seed);
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double log_rate_of_life_formation_in_habitable_planets = sample_normal(1, 50, seed);
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double log_fraction_of_habitable_planets_in_which_any_life_appears;
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/*
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Consider:
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a = underlying normal
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b = rate_of_life_formation_in_habitable_planets = exp(underlying normal) = exp(a)
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c = 1 - exp(-b) = fraction_of_habitable_planets_in_which_any_life_appears
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d = log(c)
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Looking at the Taylor expansion for c = 1 - exp(-b), it's
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b - b^2/2 + b^3/6 - x^b/24, etc.
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<https://www.wolframalpha.com/input?i=1-exp%28-x%29>
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When b ~ 0 (as is often the case), this is close to b.
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But now, if b ~ 0, c ~ b
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and d = log(c) ~ log(b) = log(exp(a)) = a
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Now, we could play around with estimating errors,
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and indeed if we want b^2/2 = exp(a)^2/2 < 10^(-n), i.e., to have n decimal digits of precision,
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we could compute this as e.g., a < (nlog(10) + log(2))/2
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so for example if we want ten digits of precision, that's a < -11
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Empirically, the two numbers as calculated in C do become really close around 11 or so,
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and at 38 that calculation results in a -inf (so probably a floating point error or similar.)
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So we should be using that formula for somewhere between -38 << a < -11
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I chose -16 as a happy medium after playing around with
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double invert(double x){
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return log(1-exp(-exp(-x)));
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}
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for(int i=0; i<64; i++){
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double j = i;
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printf("for %lf, log(1-exp(-exp(-x))) is calculated as... %lf\n", j, invert(j));
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}
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and <https://www.wolframalpha.com/input?i=log%281-exp%28-exp%28-16%29%29%29>
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*/
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if (log_rate_of_life_formation_in_habitable_planets < -16) {
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log_fraction_of_habitable_planets_in_which_any_life_appears = log_rate_of_life_formation_in_habitable_planets;
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} else {
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double rate_of_life_formation_in_habitable_planets = exp(log_rate_of_life_formation_in_habitable_planets);
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double fraction_of_habitable_planets_in_which_any_life_appears = -expm1(-rate_of_life_formation_in_habitable_planets);
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log_fraction_of_habitable_planets_in_which_any_life_appears = log(fraction_of_habitable_planets_in_which_any_life_appears);
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}
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double log_fraction_of_planets_with_life_in_which_intelligent_life_appears = sample_uniform(log(0.001), log(1), seed);
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double log_fraction_of_intelligent_planets_which_are_detectable_as_such = sample_uniform(log(0.01), log(1), seed);
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double log_longevity_of_detectable_civilizations = sample_uniform(log(100), log(10000000000), seed);
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double log_n =
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log_rate_of_star_formation +
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log_fraction_of_stars_with_planets +
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log_number_of_habitable_planets_per_star_system +
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log_fraction_of_habitable_planets_in_which_any_life_appears +
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log_fraction_of_planets_with_life_in_which_intelligent_life_appears +
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log_fraction_of_intelligent_planets_which_are_detectable_as_such +
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log_longevity_of_detectable_civilizations;
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return log_n;
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}
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double sample_are_we_alone_logspace(uint64_t * seed)
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{
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double log_n = sample_fermi_logspace(seed);
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return ((log_n > 0) ? 1 : 0);
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// log_n > 0 => n > 1
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}
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int main()
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{
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// set randomness seed
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uint64_t* seed = malloc(sizeof(uint64_t));
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*seed = 1001; // xorshift can't start with a seed of 0
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double logspace_fermi_proportion = 0;
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int n_samples = 1000 * 1000;
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for (int i = 0; i < n_samples; i++) {
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double result = sample_are_we_alone_logspace(seed);
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logspace_fermi_proportion += result;
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}
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double p_not_alone = logspace_fermi_proportion / n_samples;
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printf("Probability that we are not alone: %lf (%.lf%%)\n", p_not_alone, p_not_alone * 100);
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free(seed);
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}
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CUDA/examples/core/06_dissolving_fermi_paradox/fermi.pdf
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CUDA/examples/core/06_dissolving_fermi_paradox/fermi.pdf
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CUDA/examples/core/06_dissolving_fermi_paradox/naive.c
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CUDA/examples/core/06_dissolving_fermi_paradox/naive.c
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#include "../../../squiggle.h"
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#include <math.h>
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#include <stdint.h>
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#include <stdio.h>
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#include <stdlib.h>
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#define VERBOSE 0
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double sample_loguniform(double a, double b, uint64_t* seed)
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{
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return exp(sample_uniform(log(a), log(b), seed));
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}
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int main()
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{
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// Replicate <https://arxiv.org/pdf/1806.02404.pdf>, and in particular the red line in page 11.
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// Could also be interesting to just produce and save many samples.
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// set randomness seed
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uint64_t* seed = malloc(sizeof(uint64_t));
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*seed = UINT64_MAX / 64; // xorshift can't start with a seed of 0
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// Do this naïvely, without worrying that much about numerical precision
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double sample_fermi_naive(uint64_t * seed)
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{
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double rate_of_star_formation = sample_loguniform(1, 100, seed);
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double fraction_of_stars_with_planets = sample_loguniform(0.1, 1, seed);
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double number_of_habitable_planets_per_star_system = sample_loguniform(0.1, 1, seed);
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double rate_of_life_formation_in_habitable_planets = sample_lognormal(1, 50, seed);
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double fraction_of_habitable_planets_in_which_any_life_appears = -expm1(-rate_of_life_formation_in_habitable_planets);
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// double fraction_of_habitable_planets_in_which_any_life_appears = 1-exp(-rate_of_life_formation_in_habitable_planets);
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// but with more precision
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double fraction_of_planets_with_life_in_which_intelligent_life_appears = sample_loguniform(0.001, 1, seed);
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double fraction_of_intelligent_planets_which_are_detectable_as_such = sample_loguniform(0.01, 1, seed);
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double longevity_of_detectable_civilizations = sample_loguniform(100, 10000000000, seed);
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if(VERBOSE) printf(" rate_of_star_formation = %lf\n", rate_of_star_formation);
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if(VERBOSE) printf(" fraction_of_stars_with_planets = %lf\n", fraction_of_stars_with_planets);
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if(VERBOSE) printf(" number_of_habitable_planets_per_star_system = %lf\n", number_of_habitable_planets_per_star_system);
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if(VERBOSE) printf(" rate_of_life_formation_in_habitable_planets = %.16lf\n", rate_of_life_formation_in_habitable_planets);
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if(VERBOSE) printf(" fraction_of_habitable_planets_in_which_any_life_appears = %lf\n", fraction_of_habitable_planets_in_which_any_life_appears);
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if(VERBOSE) printf(" fraction_of_planets_with_life_in_which_intelligent_life_appears = %lf\n", fraction_of_planets_with_life_in_which_intelligent_life_appears);
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if(VERBOSE) printf(" fraction_of_intelligent_planets_which_are_detectable_as_such = %lf\n", fraction_of_intelligent_planets_which_are_detectable_as_such);
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if(VERBOSE) printf(" longevity_of_detectable_civilizations = %lf\n", longevity_of_detectable_civilizations);
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// Expected number of civilizations in the Milky way;
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// see footnote 3 (p. 5)
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double n = rate_of_star_formation * fraction_of_stars_with_planets * number_of_habitable_planets_per_star_system * fraction_of_habitable_planets_in_which_any_life_appears * fraction_of_planets_with_life_in_which_intelligent_life_appears * fraction_of_intelligent_planets_which_are_detectable_as_such * longevity_of_detectable_civilizations;
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return n;
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}
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double sample_are_we_alone_naive(uint64_t * seed)
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{
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double n = sample_fermi_naive(seed);
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return ((n > 1) ? 1 : 0);
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}
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double n = 1000000;
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double naive_fermi_proportion = 0;
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for (int i = 0; i < n; i++) {
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double result = sample_are_we_alone_naive(seed);
|
||||
if(VERBOSE) printf("result: %lf\n", result);
|
||||
naive_fermi_proportion += result;
|
||||
}
|
||||
printf("Naïve %% that we are not alone: %lf\n", naive_fermi_proportion / n);
|
||||
|
||||
free(seed);
|
||||
|
||||
/*
|
||||
double invert(double x){
|
||||
return log(1-exp(-exp(-x)));
|
||||
}
|
||||
for(int i=0; i<64; i++){
|
||||
double j = i;
|
||||
printf("for %lf, log(1-exp(-exp(-x))) is calculated as... %lf\n", j, invert(j));
|
||||
}
|
||||
*/
|
||||
}
|
BIN
CUDA/examples/core/06_dissolving_fermi_paradox/scratchpad
Executable file
BIN
CUDA/examples/core/06_dissolving_fermi_paradox/scratchpad
Executable file
Binary file not shown.
91
CUDA/examples/core/makefile
Normal file
91
CUDA/examples/core/makefile
Normal file
|
@ -0,0 +1,91 @@
|
|||
# Interface:
|
||||
# make all
|
||||
# make format-all
|
||||
# make run-all
|
||||
# make one DIR=01_one_sample
|
||||
# make format-one DIR=01_one_sample
|
||||
# make run-one DIR=01_one_sample
|
||||
# make time-linux-one DIR=01_one_sample
|
||||
# make profile-one DIR=01_one_sample
|
||||
|
||||
# Compiler
|
||||
CC=gcc
|
||||
# CC=tcc # <= faster compilation
|
||||
|
||||
# Main file
|
||||
SRC=example.c
|
||||
OUTPUT=example
|
||||
|
||||
## Dependencies
|
||||
SQUIGGLE=../../squiggle.c
|
||||
MATH=-lm
|
||||
DEPS=$(SQUIGGLE) $(MATH)
|
||||
|
||||
## Flags
|
||||
# DEBUG=-fsanitize=address,undefined -fanalyzer
|
||||
# DEBUG=-g
|
||||
# DEBUG=
|
||||
WARN=-Wall -Wextra -Wdouble-promotion -Wconversion
|
||||
STANDARD=-std=c99
|
||||
OPTIMIZED=-O3 #-Ofast
|
||||
|
||||
## Formatter
|
||||
STYLE_BLUEPRINT=webkit
|
||||
FORMATTER=clang-format -i -style=$(STYLE_BLUEPRINT)
|
||||
|
||||
## make all
|
||||
all:
|
||||
$(CC) $(OPTIMIZED) $(DEBUG) $(WARN) 00_example_template/$(SRC) $(DEPS) -o 00_example_template/$(OUTPUT)
|
||||
$(CC) $(OPTIMIZED) $(DEBUG) $(WARN) 01_one_sample/$(SRC) $(DEPS) -o 01_one_sample/$(OUTPUT)
|
||||
$(CC) $(OPTIMIZED) $(DEBUG) $(WARN) 02_time_to_botec/$(SRC) $(DEPS) -o 02_time_to_botec/$(OUTPUT)
|
||||
$(CC) $(OPTIMIZED) $(DEBUG) $(WARN) 03_gcc_nested_function/$(SRC) $(DEPS) -o 03_gcc_nested_function/$(OUTPUT)
|
||||
$(CC) $(OPTIMIZED) $(DEBUG) $(WARN) 04_gamma_beta/$(SRC) $(DEPS) -o 04_gamma_beta/$(OUTPUT)
|
||||
$(CC) $(OPTIMIZED) $(DEBUG) $(WARN) 05_hundred_lognormals/$(SRC) $(DEPS) -o 05_hundred_lognormals/$(OUTPUT)
|
||||
$(CC) $(OPTIMIZED) $(DEBUG) $(WARN) 06_dissolving_fermi_paradox/$(SRC) $(DEPS) -o 06_dissolving_fermi_paradox/$(OUTPUT)
|
||||
|
||||
|
||||
format-all:
|
||||
$(FORMATTER) 00_example_template/$(SRC)
|
||||
$(FORMATTER) 01_one_sample/$(SRC)
|
||||
$(FORMATTER) 02_time_to_botec/$(SRC)
|
||||
$(FORMATTER) 03_gcc_nested_function/$(SRC)
|
||||
$(FORMATTER) 04_gamma_beta/$(SRC)
|
||||
$(FORMATTER) 05_hundred_lognormals/$(SRC)
|
||||
$(FORMATTER) 06_dissolving_fermi_paradox/$(SRC)
|
||||
|
||||
run-all:
|
||||
00_example_template/$(OUTPUT)
|
||||
01_one_sample/$(OUTPUT)
|
||||
02_time_to_botec/$(OUTPUT)
|
||||
03_gcc_nested_function/$(OUTPUT)
|
||||
04_gamma_beta/$(OUTPUT)
|
||||
05_hundred_lognormals/$(OUTPUT)
|
||||
06_dissolving_fermi_paradox/$(OUTPUT)
|
||||
|
||||
## make one DIR=01_one_sample
|
||||
one: $(DIR)/$(SRC)
|
||||
$(CC) $(OPTIMIZED) $(DEBUG) $(WARN) $(DIR)/$(SRC) $(DEPS) -o $(DIR)/$(OUTPUT)
|
||||
|
||||
## make format-one DIR=01_one_sample
|
||||
format-one: $(DIR)/$(SRC)
|
||||
$(FORMATTER) $(DIR)/$(SRC)
|
||||
|
||||
## make run-one DIR=01_one_sample
|
||||
run-one: $(DIR)/$(OUTPUT)
|
||||
$(DIR)/$(OUTPUT) && echo
|
||||
|
||||
## make time-linux-one DIR=01_one_sample
|
||||
time-linux-one: $(DIR)/$(OUTPUT)
|
||||
@echo "Requires /bin/time, found on GNU/Linux systems" && echo
|
||||
@echo "Running 100x and taking avg time $(DIR)/$(OUTPUT)"
|
||||
@t=$$(/usr/bin/time -f "%e" -p bash -c 'for i in {1..100}; do $(DIR)/$(OUTPUT); done' 2>&1 >/dev/null | grep real | awk '{print $$2}' ); echo "scale=2; 1000 * $$t / 100" | bc | sed "s|^|Time using 1 thread: |" | sed 's|$$|ms|' && echo
|
||||
|
||||
## e.g., make profile-linux-one DIR=01_one_sample
|
||||
profile-linux-one:
|
||||
echo "Requires perf, which depends on the kernel version, and might be in linux-tools package or similar"
|
||||
echo "Must be run as sudo"
|
||||
$(CC) $(OPTIMIZED) $(DEBUG) $(WARN) $(DIR)/$(SRC) $(DEPS) -o $(DIR)/$(OUTPUT)
|
||||
# $(CC) $(SRC) $(DEPS) -o $(OUTPUT)
|
||||
sudo perf record $(DIR)/$(OUTPUT)
|
||||
sudo perf report
|
||||
rm perf.data
|
BIN
CUDA/examples/more/00_example_template/example
Executable file
BIN
CUDA/examples/more/00_example_template/example
Executable file
Binary file not shown.
19
CUDA/examples/more/00_example_template/example.c
Normal file
19
CUDA/examples/more/00_example_template/example.c
Normal file
|
@ -0,0 +1,19 @@
|
|||
#include "../../../squiggle.h"
|
||||
#include "../../../squiggle_more.h"
|
||||
#include <stdio.h>
|
||||
#include <stdlib.h>
|
||||
|
||||
double sample_model(uint64_t* seed){
|
||||
return sample_to(1, 10, seed);
|
||||
}
|
||||
|
||||
int main()
|
||||
{
|
||||
// set randomness seed
|
||||
uint64_t* seed = malloc(sizeof(uint64_t));
|
||||
*seed = 1000; // xorshift can't start with 0
|
||||
|
||||
// ...
|
||||
|
||||
free(seed);
|
||||
}
|
BIN
CUDA/examples/more/02_ci_beta/example
Executable file
BIN
CUDA/examples/more/02_ci_beta/example
Executable file
Binary file not shown.
30
CUDA/examples/more/02_ci_beta/example.c
Normal file
30
CUDA/examples/more/02_ci_beta/example.c
Normal file
|
@ -0,0 +1,30 @@
|
|||
#include "../../../squiggle.h"
|
||||
#include "../../../squiggle_more.h"
|
||||
#include <stdio.h>
|
||||
#include <stdlib.h>
|
||||
|
||||
// Estimate functions
|
||||
double sample_beta_3_2(uint64_t* seed)
|
||||
{
|
||||
return sample_beta(3.0, 2.0, seed);
|
||||
}
|
||||
|
||||
int main()
|
||||
{
|
||||
// set randomness seed
|
||||
uint64_t* seed = malloc(sizeof(uint64_t));
|
||||
*seed = 1000; // xorshift can't start with 0
|
||||
|
||||
int n_samples = 1 * MILLION;
|
||||
double* xs = malloc(sizeof(double) * (size_t)n_samples);
|
||||
for (int i = 0; i < n_samples; i++) {
|
||||
xs[i] = sample_beta_3_2(seed);
|
||||
}
|
||||
|
||||
printf("\n# Stats\n");
|
||||
array_print_stats(xs, n_samples);
|
||||
printf("\n# Histogram\n");
|
||||
array_print_histogram(xs, n_samples, 23);
|
||||
|
||||
free(seed);
|
||||
}
|
BIN
CUDA/examples/more/03_ci_beta_parallel/example
Executable file
BIN
CUDA/examples/more/03_ci_beta_parallel/example
Executable file
Binary file not shown.
28
CUDA/examples/more/03_ci_beta_parallel/example.c
Normal file
28
CUDA/examples/more/03_ci_beta_parallel/example.c
Normal file
|
@ -0,0 +1,28 @@
|
|||
#include "../../../squiggle.h"
|
||||
#include "../../../squiggle_more.h"
|
||||
#include <stdio.h>
|
||||
#include <stdlib.h>
|
||||
|
||||
// Estimate functions
|
||||
double sample_beta_3_2(uint64_t* seed)
|
||||
{
|
||||
return sample_beta(3.0, 2.0, seed);
|
||||
}
|
||||
|
||||
int main()
|
||||
{
|
||||
// set randomness seed
|
||||
uint64_t* seed = malloc(sizeof(uint64_t));
|
||||
*seed = 1000; // xorshift can't start with 0
|
||||
|
||||
int n_samples = 1 * MILLION;
|
||||
double* xs = malloc(sizeof(double) * (size_t)n_samples);
|
||||
sampler_parallel(sample_beta_3_2, xs, 16, n_samples);
|
||||
|
||||
printf("\n# Stats\n");
|
||||
array_print_stats(xs, n_samples);
|
||||
printf("\n# Histogram\n");
|
||||
array_print_histogram(xs, n_samples, 23);
|
||||
|
||||
free(seed);
|
||||
}
|
BIN
CUDA/examples/more/04_nuclear_war/example
Executable file
BIN
CUDA/examples/more/04_nuclear_war/example
Executable file
Binary file not shown.
63
CUDA/examples/more/04_nuclear_war/example.c
Normal file
63
CUDA/examples/more/04_nuclear_war/example.c
Normal file
|
@ -0,0 +1,63 @@
|
|||
#include "../../../squiggle.h"
|
||||
#include "../../../squiggle_more.h"
|
||||
#include <math.h>
|
||||
#include <stdio.h>
|
||||
#include <stdlib.h>
|
||||
|
||||
double probability_of_dying_nuno(uint64_t* seed)
|
||||
{
|
||||
double first_year_russian_nuclear_weapons = 1953;
|
||||
double current_year = 2022;
|
||||
double laplace_probability_nuclear_exchange_year = sample_beta(1, current_year - first_year_russian_nuclear_weapons + 1, seed);
|
||||
double laplace_probability_nuclear_exchange_month = 1 - pow(1 - laplace_probability_nuclear_exchange_year, (1.0 / 12.0));
|
||||
|
||||
double london_hit_conditional_on_russia_nuclear_weapon_usage = sample_beta(7.67, 69.65, seed);
|
||||
// I.e., a beta distribution with a range of 0.05 to 0.16 into: https://nunosempere.com/blog/2023/03/15/fit-beta/
|
||||
// 0.05 were my estimate and Samotsvety's estimate in March 2022, respectively:
|
||||
// https://forum.effectivealtruism.org/posts/KRFXjCqqfGQAYirm5/samotsvety-nuclear-risk-forecasts-march-2022#Nu_o_Sempere
|
||||
double informed_actor_not_able_to_escape = sample_beta(3.26212166586967, 3.26228162008564, seed);
|
||||
// 0.2 to 0.8, i.e., 20% to 80%, again using the previous tool
|
||||
double proportion_which_die_if_bomb_drops_in_london = sample_beta(10.00, 2.45, seed); // 60% to 95%
|
||||
|
||||
double probability_of_dying = laplace_probability_nuclear_exchange_month * london_hit_conditional_on_russia_nuclear_weapon_usage * informed_actor_not_able_to_escape * proportion_which_die_if_bomb_drops_in_london;
|
||||
return probability_of_dying;
|
||||
}
|
||||
|
||||
double probability_of_dying_eli(uint64_t* seed)
|
||||
{
|
||||
double russia_nato_nuclear_exchange_in_next_month = sample_beta(1.30, 1182.99, seed); // .0001 to .003
|
||||
double london_hit_conditional = sample_beta(3.47, 8.97, seed); // 0.1 to 0.5
|
||||
double informed_actors_not_able_to_escape = sample_beta(2.73, 5.67, seed); // .1 to .6
|
||||
double proportion_which_die_if_bomb_drops_in_london = sample_beta(3.00, 1.46, seed); // 0.3 to 0.95;
|
||||
|
||||
double probability_of_dying = russia_nato_nuclear_exchange_in_next_month * london_hit_conditional * informed_actors_not_able_to_escape * proportion_which_die_if_bomb_drops_in_london;
|
||||
return probability_of_dying;
|
||||
}
|
||||
|
||||
double sample_nuclear_model(uint64_t* seed)
|
||||
{
|
||||
double (*samplers[])(uint64_t*) = { probability_of_dying_nuno, probability_of_dying_eli };
|
||||
double weights[] = { 0.5, 0.5 };
|
||||
return sample_mixture(samplers, weights, 2, seed);
|
||||
}
|
||||
|
||||
int main()
|
||||
{
|
||||
// set randomness seed
|
||||
uint64_t* seed = malloc(sizeof(uint64_t));
|
||||
*seed = 1000; // xorshift can't start with 0
|
||||
|
||||
int n = 1 * MILLION;
|
||||
double* xs = malloc(sizeof(double) * (size_t)n);
|
||||
for (int i = 0; i < n; i++) {
|
||||
xs[i] = sample_nuclear_model(seed);
|
||||
}
|
||||
|
||||
printf("\n# Stats\n");
|
||||
array_print_stats(xs, n);
|
||||
printf("\n# Histogram\n");
|
||||
array_print_90_ci_histogram(xs, n, 20);
|
||||
|
||||
free(xs);
|
||||
free(seed);
|
||||
}
|
BIN
CUDA/examples/more/04_nuclear_war/scratchpad/example
Executable file
BIN
CUDA/examples/more/04_nuclear_war/scratchpad/example
Executable file
Binary file not shown.
20
CUDA/examples/more/04_nuclear_war/scratchpad/example.c
Normal file
20
CUDA/examples/more/04_nuclear_war/scratchpad/example.c
Normal file
|
@ -0,0 +1,20 @@
|
|||
#include "../../../squiggle.h"
|
||||
#include <stdint.h>
|
||||
#include <stdio.h>
|
||||
#include <stdlib.h>
|
||||
|
||||
int main()
|
||||
{
|
||||
// set randomness seed
|
||||
uint64_t* seed = malloc(sizeof(uint64_t));
|
||||
*seed = 1000; // xorshift can't start with 0
|
||||
double firstYearRussianNuclearWeapons = 1953;
|
||||
double currentYear = 2023;
|
||||
|
||||
for(int i=0; i<10; i++){
|
||||
double laplace_beta = sample_beta(currentYear-firstYearRussianNuclearWeapons + 1, 1, seed);
|
||||
printf("%f\n", laplace_beta);
|
||||
}
|
||||
|
||||
free(seed);
|
||||
}
|
53
CUDA/examples/more/04_nuclear_war/scratchpad/makefile
Normal file
53
CUDA/examples/more/04_nuclear_war/scratchpad/makefile
Normal file
|
@ -0,0 +1,53 @@
|
|||
# Interface:
|
||||
# make
|
||||
# make build
|
||||
# make format
|
||||
# make run
|
||||
|
||||
# Compiler
|
||||
CC=gcc
|
||||
# CC=tcc # <= faster compilation
|
||||
|
||||
# Main file
|
||||
SRC=example.c ../../../squiggle.c
|
||||
OUTPUT=example
|
||||
|
||||
## Dependencies
|
||||
MATH=-lm
|
||||
|
||||
## Flags
|
||||
DEBUG= #'-g'
|
||||
STANDARD=-std=c99
|
||||
WARNINGS=-Wall
|
||||
OPTIMIZED=-O3 #-Ofast
|
||||
# OPENMP=-fopenmp
|
||||
|
||||
## Formatter
|
||||
STYLE_BLUEPRINT=webkit
|
||||
FORMATTER=clang-format -i -style=$(STYLE_BLUEPRINT)
|
||||
|
||||
## make build
|
||||
build: $(SRC)
|
||||
$(CC) $(OPTIMIZED) $(DEBUG) $(SRC) $(MATH) -o $(OUTPUT)
|
||||
|
||||
format: $(SRC)
|
||||
$(FORMATTER) $(SRC)
|
||||
|
||||
run: $(SRC) $(OUTPUT)
|
||||
OMP_NUM_THREADS=1 ./$(OUTPUT) && echo
|
||||
|
||||
time-linux:
|
||||
@echo "Requires /bin/time, found on GNU/Linux systems" && echo
|
||||
|
||||
@echo "Running 100x and taking avg time $(OUTPUT)"
|
||||
@t=$$(/usr/bin/time -f "%e" -p bash -c 'for i in {1..100}; do $(OUTPUT); done' 2>&1 >/dev/null | grep real | awk '{print $$2}' ); echo "scale=2; 1000 * $$t / 100" | bc | sed "s|^|Time using 1 thread: |" | sed 's|$$|ms|' && echo
|
||||
|
||||
## Profiling
|
||||
|
||||
profile-linux:
|
||||
echo "Requires perf, which depends on the kernel version, and might be in linux-tools package or similar"
|
||||
echo "Must be run as sudo"
|
||||
$(CC) $(SRC) $(MATH) -o $(OUTPUT)
|
||||
sudo perf record ./$(OUTPUT)
|
||||
sudo perf report
|
||||
rm perf.data
|
BIN
CUDA/examples/more/05_burn_10kg_fat/example
Executable file
BIN
CUDA/examples/more/05_burn_10kg_fat/example
Executable file
Binary file not shown.
43
CUDA/examples/more/05_burn_10kg_fat/example.c
Normal file
43
CUDA/examples/more/05_burn_10kg_fat/example.c
Normal file
|
@ -0,0 +1,43 @@
|
|||
#include "../../../squiggle.h"
|
||||
#include "../../../squiggle_more.h"
|
||||
#include <math.h>
|
||||
#include <stdio.h>
|
||||
#include <stdlib.h>
|
||||
|
||||
double sample_minutes_per_day_jumping_rope_needed_to_burn_10kg(uint64_t* seed)
|
||||
{
|
||||
double kcal_jumping_rope_minute = sample_to(15, 20, seed);
|
||||
double kcal_jumping_rope_hour = kcal_jumping_rope_minute * 60;
|
||||
|
||||
double kcal_in_kg_of_fat = 7700;
|
||||
double num_kg_of_fat_to_lose = 10;
|
||||
|
||||
double hours_jumping_rope_needed = kcal_in_kg_of_fat * num_kg_of_fat_to_lose / kcal_jumping_rope_hour;
|
||||
|
||||
double days_until_end_of_year = 152; // as of 2023-08-01
|
||||
double hours_per_day = hours_jumping_rope_needed / days_until_end_of_year;
|
||||
double minutes_per_day = hours_per_day * 60;
|
||||
return minutes_per_day;
|
||||
}
|
||||
|
||||
int main()
|
||||
{
|
||||
// set randomness seed
|
||||
uint64_t* seed = malloc(sizeof(uint64_t));
|
||||
*seed = 1000; // xorshift can't start with 0
|
||||
|
||||
int n = 1000 * 1000;
|
||||
double* xs = malloc(sizeof(double) * (size_t)n);
|
||||
for (int i = 0; i < n; i++) {
|
||||
xs[i] = sample_minutes_per_day_jumping_rope_needed_to_burn_10kg(seed);
|
||||
}
|
||||
|
||||
printf("## How many minutes per day do I have to jump rope to lose 10kg of fat by the end of the year?\n");
|
||||
|
||||
printf("\n# Stats\n");
|
||||
array_print_stats(xs, n);
|
||||
printf("\n# Histogram\n");
|
||||
array_print_histogram(xs, n, 23);
|
||||
|
||||
free(seed);
|
||||
}
|
BIN
CUDA/examples/more/06_nuclear_recovery/example
Executable file
BIN
CUDA/examples/more/06_nuclear_recovery/example
Executable file
Binary file not shown.
84
CUDA/examples/more/06_nuclear_recovery/example.c
Normal file
84
CUDA/examples/more/06_nuclear_recovery/example.c
Normal file
|
@ -0,0 +1,84 @@
|
|||
#include "../../../squiggle.h"
|
||||
#include "../../../squiggle_more.h"
|
||||
#include <math.h>
|
||||
#include <stdio.h>
|
||||
#include <stdlib.h>
|
||||
|
||||
double yearly_probability_nuclear_collapse(double year, uint64_t* seed)
|
||||
{
|
||||
double successes = 0;
|
||||
double failures = (year - 1960);
|
||||
return sample_laplace(successes, failures, seed);
|
||||
// ^ can change to (successes + 1)/(trials + 2)
|
||||
// to get a probability,
|
||||
// rather than sampling from a distribution over probabilities.
|
||||
}
|
||||
double yearly_probability_nuclear_collapse_2023(uint64_t* seed)
|
||||
{
|
||||
return yearly_probability_nuclear_collapse(2023, seed);
|
||||
}
|
||||
|
||||
double yearly_probability_nuclear_collapse_after_recovery(double year, double rebuilding_period_length_years, uint64_t* seed)
|
||||
{
|
||||
// assumption: nuclear
|
||||
double successes = 1.0;
|
||||
double failures = (year - rebuilding_period_length_years - 1960 - 1);
|
||||
return sample_laplace(successes, failures, seed);
|
||||
}
|
||||
double yearly_probability_nuclear_collapse_after_recovery_example(uint64_t* seed)
|
||||
{
|
||||
double year = 2070;
|
||||
double rebuilding_period_length_years = 30;
|
||||
// So, there was a nuclear collapse in 2040,
|
||||
// then a recovery period of 30 years
|
||||
// and it's now 2070
|
||||
return yearly_probability_nuclear_collapse_after_recovery(year, rebuilding_period_length_years, seed);
|
||||
}
|
||||
|
||||
double yearly_probability_nuclear_collapse_after_recovery_antiinductive(uint64_t* seed)
|
||||
{
|
||||
return yearly_probability_nuclear_collapse(2023, seed) / 2;
|
||||
}
|
||||
|
||||
int main()
|
||||
{
|
||||
// set randomness seed
|
||||
uint64_t* seed = malloc(sizeof(uint64_t));
|
||||
*seed = 1000; // xorshift can't start with 0
|
||||
|
||||
int n_samples = 1000000;
|
||||
|
||||
// Before a first nuclear collapse
|
||||
printf("## Before the first nuclear collapse\n");
|
||||
double* yearly_probability_nuclear_collapse_2023_samples = malloc(sizeof(double) * (size_t)n_samples);
|
||||
for (int i = 0; i < n_samples; i++) {
|
||||
yearly_probability_nuclear_collapse_2023_samples[i] = yearly_probability_nuclear_collapse_2023(seed);
|
||||
}
|
||||
ci ci_90_2023 = array_get_90_ci(yearly_probability_nuclear_collapse_2023_samples, n_samples);
|
||||
printf("90%% confidence interval: [%f, %f]\n", ci_90_2023.low, ci_90_2023.high);
|
||||
|
||||
// After the first nuclear collapse
|
||||
printf("\n## After the first nuclear collapse\n");
|
||||
|
||||
double* yearly_probability_nuclear_collapse_after_recovery_samples = malloc(sizeof(double) * (size_t)n_samples);
|
||||
for (int i = 0; i < n_samples; i++) {
|
||||
yearly_probability_nuclear_collapse_after_recovery_samples[i] = yearly_probability_nuclear_collapse_after_recovery_example(seed);
|
||||
}
|
||||
ci ci_90_2070 = array_get_90_ci(yearly_probability_nuclear_collapse_after_recovery_samples, 1000000);
|
||||
printf("90%% confidence interval: [%f, %f]\n", ci_90_2070.low, ci_90_2070.high);
|
||||
|
||||
// After the first nuclear collapse (antiinductive)
|
||||
printf("\n## After the first nuclear collapse (antiinductive)\n");
|
||||
double* yearly_probability_nuclear_collapse_after_recovery_antiinductive_samples = malloc(sizeof(double) * (size_t)n_samples);
|
||||
for (int i = 0; i < n_samples; i++) {
|
||||
yearly_probability_nuclear_collapse_after_recovery_antiinductive_samples[i] = yearly_probability_nuclear_collapse_after_recovery_antiinductive(seed);
|
||||
}
|
||||
ci ci_90_antiinductive = array_get_90_ci(yearly_probability_nuclear_collapse_after_recovery_antiinductive_samples, 1000000);
|
||||
printf("90%% confidence interval: [%f, %f]\n", ci_90_antiinductive.low, ci_90_antiinductive.high);
|
||||
|
||||
// free seeds
|
||||
free(yearly_probability_nuclear_collapse_2023_samples);
|
||||
free(yearly_probability_nuclear_collapse_after_recovery_samples);
|
||||
free(yearly_probability_nuclear_collapse_after_recovery_antiinductive_samples);
|
||||
free(seed);
|
||||
}
|
BIN
CUDA/examples/more/07_algebra/example
Executable file
BIN
CUDA/examples/more/07_algebra/example
Executable file
Binary file not shown.
26
CUDA/examples/more/07_algebra/example.c
Normal file
26
CUDA/examples/more/07_algebra/example.c
Normal file
|
@ -0,0 +1,26 @@
|
|||
#include "../../../squiggle.h"
|
||||
#include "../../../squiggle_more.h"
|
||||
#include <math.h>
|
||||
#include <stdio.h>
|
||||
#include <stdlib.h>
|
||||
|
||||
int main()
|
||||
{
|
||||
// set randomness seed
|
||||
uint64_t* seed = malloc(sizeof(uint64_t));
|
||||
*seed = 1000; // xorshift can't start with 0
|
||||
|
||||
normal_params n1 = { .mean = 1.0, .std = 3.0 };
|
||||
normal_params n2 = { .mean = 2.0, .std = 4.0 };
|
||||
normal_params sn = algebra_sum_normals(n1, n2);
|
||||
printf("The sum of Normal(%f, %f) and Normal(%f, %f) is Normal(%f, %f)\n",
|
||||
n1.mean, n1.std, n2.mean, n2.std, sn.mean, sn.std);
|
||||
|
||||
lognormal_params ln1 = { .logmean = 1.0, .logstd = 3.0 };
|
||||
lognormal_params ln2 = { .logmean = 2.0, .logstd = 4.0 };
|
||||
lognormal_params sln = algebra_product_lognormals(ln1, ln2);
|
||||
printf("The product of Lognormal(%f, %f) and Lognormal(%f, %f) is Lognormal(%f, %f)\n",
|
||||
ln1.logmean, ln1.logstd, ln2.logmean, ln2.logstd, sln.logmean, sln.logstd);
|
||||
|
||||
free(seed);
|
||||
}
|
BIN
CUDA/examples/more/08_algebra_and_conversion/example
Executable file
BIN
CUDA/examples/more/08_algebra_and_conversion/example
Executable file
Binary file not shown.
33
CUDA/examples/more/08_algebra_and_conversion/example.c
Normal file
33
CUDA/examples/more/08_algebra_and_conversion/example.c
Normal file
|
@ -0,0 +1,33 @@
|
|||
#include "../../../squiggle.h"
|
||||
#include "../../../squiggle_more.h"
|
||||
#include <math.h>
|
||||
#include <stdio.h>
|
||||
#include <stdlib.h>
|
||||
|
||||
int main()
|
||||
{
|
||||
// set randomness seed
|
||||
uint64_t* seed = malloc(sizeof(uint64_t));
|
||||
*seed = 1000; // xorshift can't start with 0
|
||||
|
||||
// Convert to 90% confidence interval form and back
|
||||
lognormal_params ln1 = { .logmean = 1.0, .logstd = 3.0 };
|
||||
ci ln1_ci = convert_lognormal_params_to_ci(ln1);
|
||||
printf("The 90%% confidence interval of Lognormal(%f, %f) is [%f, %f]\n",
|
||||
ln1.logmean, ln1.logstd,
|
||||
ln1_ci.low, ln1_ci.high);
|
||||
lognormal_params ln1_params2 = convert_ci_to_lognormal_params(ln1_ci);
|
||||
printf("The lognormal which has 90%% confidence interval [%f, %f] is Lognormal(%f, %f)\n",
|
||||
ln1_ci.low, ln1_ci.high,
|
||||
ln1_params2.logmean, ln1_params2.logstd);
|
||||
|
||||
lognormal_params ln2 = convert_ci_to_lognormal_params((ci) { .low = 1, .high = 10 });
|
||||
lognormal_params ln3 = convert_ci_to_lognormal_params((ci) { .low = 5, .high = 50 });
|
||||
|
||||
lognormal_params sln = algebra_product_lognormals(ln2, ln3);
|
||||
ci sln_ci = convert_lognormal_params_to_ci(sln);
|
||||
|
||||
printf("Result of some lognormal products: to(%f, %f)\n", sln_ci.low, sln_ci.high);
|
||||
|
||||
free(seed);
|
||||
}
|
BIN
CUDA/examples/more/09_ergonomic_algebra/example
Executable file
BIN
CUDA/examples/more/09_ergonomic_algebra/example
Executable file
Binary file not shown.
Some files were not shown because too many files have changed in this diff Show More
Loading…
Reference in New Issue
Block a user